Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32775 | 5' | -56.7 | NC_007346.1 | + | 361643 | 0.67 | 0.975577 |
Target: 5'- cGGUAAUGCGGaGAacCGcGGCgguccaugaACCGGAUGu -3' miRNA: 3'- -CCGUUACGUC-CU--GCaCCG---------UGGCCUGC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 201197 | 0.67 | 0.97315 |
Target: 5'- uGGUGAUGguGGuguaGaUGGUACCggGGACGg -3' miRNA: 3'- -CCGUUACguCCug--C-ACCGUGG--CCUGC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 310120 | 0.67 | 0.97315 |
Target: 5'- aGGCAGUgGCGGaGA--UGGCGgCGGugGa -3' miRNA: 3'- -CCGUUA-CGUC-CUgcACCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 110137 | 0.67 | 0.970552 |
Target: 5'- aGCGAUGCAcGugGUGGCugaCGGGu- -3' miRNA: 3'- cCGUUACGUcCugCACCGug-GCCUgc -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 128719 | 0.67 | 0.964827 |
Target: 5'- cGGCGGcgGUGGcGGCgGUGGCGgCGGugGu -3' miRNA: 3'- -CCGUUa-CGUC-CUG-CACCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 56723 | 0.68 | 0.961689 |
Target: 5'- uGGUGGUGCAGGugGUaGCAauGG-CGg -3' miRNA: 3'- -CCGUUACGUCCugCAcCGUggCCuGC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 311418 | 0.68 | 0.961689 |
Target: 5'- aGGUAGUGgAGGAgaUGGCGgCGGAgGc -3' miRNA: 3'- -CCGUUACgUCCUgcACCGUgGCCUgC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 310408 | 0.68 | 0.961689 |
Target: 5'- uGGCGAUGUagaGGGAgGUGGCGga-GACGg -3' miRNA: 3'- -CCGUUACG---UCCUgCACCGUggcCUGC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 198782 | 0.68 | 0.958363 |
Target: 5'- gGGUGAUGguGGugGgGGCGauggCGGugGc -3' miRNA: 3'- -CCGUUACguCCugCaCCGUg---GCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 189479 | 0.68 | 0.954844 |
Target: 5'- uGGUAAcGguGGugGUGGUGaCGGugGu -3' miRNA: 3'- -CCGUUaCguCCugCACCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 180691 | 0.68 | 0.954844 |
Target: 5'- aGGCAGUgaagGCGGaGAcCGUGggccGCACUGGACa -3' miRNA: 3'- -CCGUUA----CGUC-CU-GCAC----CGUGGCCUGc -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 272473 | 0.68 | 0.951128 |
Target: 5'- cGGCGGUgGC-GGAgGUGGCGgaGGugGc -3' miRNA: 3'- -CCGUUA-CGuCCUgCACCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 73462 | 0.68 | 0.951128 |
Target: 5'- uGGaGGUGCAGGAUuUGGUGCCGcaaaGGCGa -3' miRNA: 3'- -CCgUUACGUCCUGcACCGUGGC----CUGC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 306278 | 0.68 | 0.951128 |
Target: 5'- cGGUAAUGguGGugGaggagaUGGUGgCGGugGu -3' miRNA: 3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 309937 | 0.68 | 0.951128 |
Target: 5'- cGGCAAUGguGGugGaggagauggUGGCGgCGGuaAUGg -3' miRNA: 3'- -CCGUUACguCCugC---------ACCGUgGCC--UGC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 179755 | 0.68 | 0.950746 |
Target: 5'- -aCAGUGCAucuaauuGGACuucacaugaGGCACCGGGCGg -3' miRNA: 3'- ccGUUACGU-------CCUGca-------CCGUGGCCUGC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 198498 | 0.68 | 0.943097 |
Target: 5'- aGGUGAUGguGGugGgGGCGauGGugGu -3' miRNA: 3'- -CCGUUACguCCugCaCCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 198381 | 0.68 | 0.943097 |
Target: 5'- aGGCGAUGguGGugGgGGUGauGGugGu -3' miRNA: 3'- -CCGUUACguCCugCaCCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 198123 | 0.68 | 0.943097 |
Target: 5'- aGGUGAUGguGGugGgGGCGauGGugGu -3' miRNA: 3'- -CCGUUACguCCugCaCCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 200852 | 0.69 | 0.929523 |
Target: 5'- aGGUGuUGguGGugGcGGCAUUGGugGa -3' miRNA: 3'- -CCGUuACguCCugCaCCGUGGCCugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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