miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 128719 0.67 0.964827
Target:  5'- cGGCGGcgGUGGcGGCgGUGGCGgCGGugGu -3'
miRNA:   3'- -CCGUUa-CGUC-CUG-CACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 184756 0.67 0.97784
Target:  5'- uGGUGAUGgGGGugGUGGgGagGGugGc -3'
miRNA:   3'- -CCGUUACgUCCugCACCgUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 189251 0.67 0.975577
Target:  5'- uGGUggaGAUGguGGugGUGGUGauGGugGu -3'
miRNA:   3'- -CCG---UUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 71689 0.67 0.97784
Target:  5'- aGGCAuAUGCuGaACGUGGUACauuGGACu -3'
miRNA:   3'- -CCGU-UACGuCcUGCACCGUGg--CCUGc -5'
32775 5' -56.7 NC_007346.1 + 310120 0.67 0.97315
Target:  5'- aGGCAGUgGCGGaGA--UGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUA-CGUC-CUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198123 0.68 0.943097
Target:  5'- aGGUGAUGguGGugGgGGCGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198381 0.68 0.943097
Target:  5'- aGGCGAUGguGGugGgGGUGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198498 0.68 0.943097
Target:  5'- aGGUGAUGguGGugGgGGCGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 73462 0.68 0.951128
Target:  5'- uGGaGGUGCAGGAUuUGGUGCCGcaaaGGCGa -3'
miRNA:   3'- -CCgUUACGUCCUGcACCGUGGC----CUGC- -5'
32775 5' -56.7 NC_007346.1 + 198782 0.68 0.958363
Target:  5'- gGGUGAUGguGGugGgGGCGauggCGGugGc -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 56723 0.68 0.961689
Target:  5'- uGGUGGUGCAGGugGUaGCAauGG-CGg -3'
miRNA:   3'- -CCGUUACGUCCugCAcCGUggCCuGC- -5'
32775 5' -56.7 NC_007346.1 + 310408 0.68 0.961689
Target:  5'- uGGCGAUGUagaGGGAgGUGGCGga-GACGg -3'
miRNA:   3'- -CCGUUACG---UCCUgCACCGUggcCUGC- -5'
32775 5' -56.7 NC_007346.1 + 179755 0.68 0.950746
Target:  5'- -aCAGUGCAucuaauuGGACuucacaugaGGCACCGGGCGg -3'
miRNA:   3'- ccGUUACGU-------CCUGca-------CCGUGGCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 180691 0.68 0.954844
Target:  5'- aGGCAGUgaagGCGGaGAcCGUGggccGCACUGGACa -3'
miRNA:   3'- -CCGUUA----CGUC-CU-GCAC----CGUGGCCUGc -5'
32775 5' -56.7 NC_007346.1 + 309937 0.68 0.951128
Target:  5'- cGGCAAUGguGGugGaggagauggUGGCGgCGGuaAUGg -3'
miRNA:   3'- -CCGUUACguCCugC---------ACCGUgGCC--UGC- -5'
32775 5' -56.7 NC_007346.1 + 306278 0.68 0.951128
Target:  5'- cGGUAAUGguGGugGaggagaUGGUGgCGGugGu -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 272473 0.68 0.951128
Target:  5'- cGGCGGUgGC-GGAgGUGGCGgaGGugGc -3'
miRNA:   3'- -CCGUUA-CGuCCUgCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 189479 0.68 0.954844
Target:  5'- uGGUAAcGguGGugGUGGUGaCGGugGu -3'
miRNA:   3'- -CCGUUaCguCCugCACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 311418 0.68 0.961689
Target:  5'- aGGUAGUGgAGGAgaUGGCGgCGGAgGc -3'
miRNA:   3'- -CCGUUACgUCCUgcACCGUgGCCUgC- -5'
32775 5' -56.7 NC_007346.1 + 309844 0.69 0.924586
Target:  5'- uGGCGGUGgAgauggcGGugGUaauggcgauggaGGCACCGGugGu -3'
miRNA:   3'- -CCGUUACgU------CCugCA------------CCGUGGCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.