miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 61125 0.7 0.908538
Target:  5'- aGGCGGaGgAGGugGUgauGGCGCCGGugaugGCGg -3'
miRNA:   3'- -CCGUUaCgUCCugCA---CCGUGGCC-----UGC- -5'
32775 5' -56.7 NC_007346.1 + 197844 0.7 0.884307
Target:  5'- uGGCGGUGguGGAgaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198000 0.72 0.826882
Target:  5'- uGGUGAUGguGGugGUGGUGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198087 0.76 0.601013
Target:  5'- cGGUGAUGguGGugGUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 110137 0.67 0.970552
Target:  5'- aGCGAUGCAcGugGUGGCugaCGGGu- -3'
miRNA:   3'- cCGUUACGUcCugCACCGug-GCCUgc -5'
32775 5' -56.7 NC_007346.1 + 198123 0.68 0.943097
Target:  5'- aGGUGAUGguGGugGgGGCGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197778 0.7 0.884307
Target:  5'- aGGCGAUGguGG-CgGUGGCGauggCGGugGa -3'
miRNA:   3'- -CCGUUACguCCuG-CACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198417 0.78 0.526276
Target:  5'- uGGCGGUGguGGugGUGGUGgCGGAg- -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 198602 0.69 0.929523
Target:  5'- gGGUGAUGguGGugGUGGagaUGGugGc -3'
miRNA:   3'- -CCGUUACguCCugCACCgugGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 49995 0.78 0.499108
Target:  5'- uGGCGAUGguGGugGUGGCGauggCGaGGCGg -3'
miRNA:   3'- -CCGUUACguCCugCACCGUg---GC-CUGC- -5'
32775 5' -56.7 NC_007346.1 + 197694 0.7 0.884307
Target:  5'- uGGCGGUGguGGAgaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198051 0.7 0.914093
Target:  5'- uGGCGGUGguGGAgaUGGUGgCGGugGu -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198306 0.71 0.842269
Target:  5'- gGGCGAUGguGGugGgggugaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198168 0.72 0.826882
Target:  5'- uGGUGAUGguGGugGUGGUGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 58095 0.73 0.759747
Target:  5'- uGGCAGUGaAGGAgGUGGCGauaaUGGugGa -3'
miRNA:   3'- -CCGUUACgUCCUgCACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198255 0.76 0.601013
Target:  5'- cGGUGAUGguGGugGUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 57493 0.66 0.985369
Target:  5'- uGGCGGUGgagaGGGAgGUGGCGagGGAgGc -3'
miRNA:   3'- -CCGUUACg---UCCUgCACCGUggCCUgC- -5'
32775 5' -56.7 NC_007346.1 + 361643 0.67 0.975577
Target:  5'- cGGUAAUGCGGaGAacCGcGGCgguccaugaACCGGAUGu -3'
miRNA:   3'- -CCGUUACGUC-CU--GCaCCG---------UGGCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 73462 0.68 0.951128
Target:  5'- uGGaGGUGCAGGAUuUGGUGCCGcaaaGGCGa -3'
miRNA:   3'- -CCgUUACGUCCUGcACCGUGGC----CUGC- -5'
32775 5' -56.7 NC_007346.1 + 198381 0.68 0.943097
Target:  5'- aGGCGAUGguGGugGgGGUGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.