miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 197748 0.82 0.317122
Target:  5'- aGGCGAUGguGGugGUGGCGauggCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugCACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197778 0.7 0.884307
Target:  5'- aGGCGAUGguGG-CgGUGGCGauggCGGugGa -3'
miRNA:   3'- -CCGUUACguCCuG-CACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197844 0.7 0.884307
Target:  5'- uGGCGGUGguGGAgaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 261862 0.66 0.986901
Target:  5'- -uCGAUGCAGGAacaacGCACCGGcaGCGg -3'
miRNA:   3'- ccGUUACGUCCUgcac-CGUGGCC--UGC- -5'
32775 5' -56.7 NC_007346.1 + 198255 0.76 0.601013
Target:  5'- cGGUGAUGguGGugGUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 197658 0.76 0.629514
Target:  5'- cGGCGAUGguGGugGUGGagauGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugCACCg---UgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 58095 0.73 0.759747
Target:  5'- uGGCAGUGaAGGAgGUGGCGauaaUGGugGa -3'
miRNA:   3'- -CCGUUACgUCCUgCACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198444 0.72 0.810883
Target:  5'- uGGCGGUGguGGAgaUGGCGgUGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198168 0.72 0.826882
Target:  5'- uGGUGAUGguGGugGUGGUGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 58047 0.71 0.877759
Target:  5'- aGGUGGaGCGGGugGUGGguUCGGugACGg -3'
miRNA:   3'- -CCGUUaCGUCCugCACCguGGCC--UGC- -5'
32775 5' -56.7 NC_007346.1 + 197898 0.72 0.834655
Target:  5'- aGGCGAUGguGG-CGaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCuGC-ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198000 0.72 0.826882
Target:  5'- uGGUGAUGguGGugGUGGUGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 49995 0.78 0.499108
Target:  5'- uGGCGAUGguGGugGUGGCGauggCGaGGCGg -3'
miRNA:   3'- -CCGUUACguCCugCACCGUg---GC-CUGC- -5'
32775 5' -56.7 NC_007346.1 + 198306 0.71 0.842269
Target:  5'- gGGCGAUGguGGugGgggugaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198417 0.78 0.526276
Target:  5'- uGGCGGUGguGGugGUGGUGgCGGAg- -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 198549 0.72 0.810883
Target:  5'- uGGCGGUGguGGAgaUGGCGgUGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198728 0.71 0.849718
Target:  5'- uGGUggUGgGGGugGUGGUGgCGGAg- -3'
miRNA:   3'- -CCGuuACgUCCugCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 197694 0.7 0.884307
Target:  5'- uGGCGGUGguGGAgaUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198087 0.76 0.601013
Target:  5'- cGGUGAUGguGGugGUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 61185 0.75 0.686382
Target:  5'- aGGCGAagGC-GGAgGUGGCGCCGGugaugGCGg -3'
miRNA:   3'- -CCGUUa-CGuCCUgCACCGUGGCC-----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.