miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 160578 1.1 0.006394
Target:  5'- gGGCAAUGCAGGACGUGGCACCGGACGu -3'
miRNA:   3'- -CCGUUACGUCCUGCACCGUGGCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 197748 0.82 0.317122
Target:  5'- aGGCGAUGguGGugGUGGCGauggCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugCACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 188804 0.82 0.317122
Target:  5'- uGGCGAUGguGGugGUGGCGauGGugGg -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 309979 0.81 0.363912
Target:  5'- cGGCAAUGguGGugGagauggcggugggGGCACCGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCa------------CCGUGGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 307231 0.8 0.421793
Target:  5'- aGGCAAUGguGGugGUGGCGauggaGGugGa -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgg---CCugC- -5'
32775 5' -56.7 NC_007346.1 + 309796 0.8 0.421793
Target:  5'- aGGCAAUGguGGugGUGGCGauggaGGugGa -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgg---CCugC- -5'
32775 5' -56.7 NC_007346.1 + 188858 0.79 0.472582
Target:  5'- uGGCGAUGguGGugGUGGUAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 49995 0.78 0.499108
Target:  5'- uGGCGAUGguGGugGUGGCGauggCGaGGCGg -3'
miRNA:   3'- -CCGUUACguCCugCACCGUg---GC-CUGC- -5'
32775 5' -56.7 NC_007346.1 + 198417 0.78 0.526276
Target:  5'- uGGCGGUGguGGugGUGGUGgCGGAg- -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 181866 0.77 0.544694
Target:  5'- uGGCGGUGguGGugGUGGCGgUGGcaaugGCGg -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgGCC-----UGC- -5'
32775 5' -56.7 NC_007346.1 + 307935 0.77 0.55026
Target:  5'- cGGCAAUGguGGugGagauggcggugggGGCACCGG-CGg -3'
miRNA:   3'- -CCGUUACguCCugCa------------CCGUGGCCuGC- -5'
32775 5' -56.7 NC_007346.1 + 308735 0.77 0.55026
Target:  5'- cGGCAAUGguGGugGagauggcggugggGGCACCGG-CGg -3'
miRNA:   3'- -CCGUUACguCCugCa------------CCGUGGCCuGC- -5'
32775 5' -56.7 NC_007346.1 + 308648 0.77 0.553981
Target:  5'- cGGCAAUGguGGugGaggagaUGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 188888 0.77 0.582102
Target:  5'- cGGCGAUGguGGugGUGGUGauGGugGc -3'
miRNA:   3'- -CCGUUACguCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 200903 0.76 0.591545
Target:  5'- gGGCGAccaUGguGGugGUGGCAaCGGugGc -3'
miRNA:   3'- -CCGUU---ACguCCugCACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 198255 0.76 0.601013
Target:  5'- cGGUGAUGguGGugGUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 198087 0.76 0.601013
Target:  5'- cGGUGAUGguGGugGUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 128038 0.76 0.620004
Target:  5'- uGGCGGUGgAGGACuUGGCGgUGGugGa -3'
miRNA:   3'- -CCGUUACgUCCUGcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197658 0.76 0.629514
Target:  5'- cGGCGAUGguGGugGUGGagauGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugCACCg---UgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 270687 0.75 0.648533
Target:  5'- cGGCAAUGguGgugaugGugGUGGCAUUGGugGu -3'
miRNA:   3'- -CCGUUACguC------CugCACCGUGGCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.