miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 32376 0.66 0.985369
Target:  5'- uGGUuuugGCGGcGGCGguuuuggugacGGCAUCGGACGu -3'
miRNA:   3'- -CCGuua-CGUC-CUGCa----------CCGUGGCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 49995 0.78 0.499108
Target:  5'- uGGCGAUGguGGugGUGGCGauggCGaGGCGg -3'
miRNA:   3'- -CCGUUACguCCugCACCGUg---GC-CUGC- -5'
32775 5' -56.7 NC_007346.1 + 56723 0.68 0.961689
Target:  5'- uGGUGGUGCAGGugGUaGCAauGG-CGg -3'
miRNA:   3'- -CCGUUACGUCCugCAcCGUggCCuGC- -5'
32775 5' -56.7 NC_007346.1 + 57493 0.66 0.985369
Target:  5'- uGGCGGUGgagaGGGAgGUGGCGagGGAgGc -3'
miRNA:   3'- -CCGUUACg---UCCUgCACCGUggCCUgC- -5'
32775 5' -56.7 NC_007346.1 + 58047 0.71 0.877759
Target:  5'- aGGUGGaGCGGGugGUGGguUCGGugACGg -3'
miRNA:   3'- -CCGUUaCGUCCugCACCguGGCC--UGC- -5'
32775 5' -56.7 NC_007346.1 + 58095 0.73 0.759747
Target:  5'- uGGCAGUGaAGGAgGUGGCGauaaUGGugGa -3'
miRNA:   3'- -CCGUUACgUCCUgCACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 60337 0.72 0.826882
Target:  5'- uGGCGAUGguGGugGUgauggugguGGCGgUGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCA---------CCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 61125 0.7 0.908538
Target:  5'- aGGCGGaGgAGGugGUgauGGCGCCGGugaugGCGg -3'
miRNA:   3'- -CCGUUaCgUCCugCA---CCGUGGCC-----UGC- -5'
32775 5' -56.7 NC_007346.1 + 61185 0.75 0.686382
Target:  5'- aGGCGAagGC-GGAgGUGGCGCCGGugaugGCGg -3'
miRNA:   3'- -CCGUUa-CGuCCUgCACCGUGGCC-----UGC- -5'
32775 5' -56.7 NC_007346.1 + 63438 0.71 0.856997
Target:  5'- uGGCAAUGguGGugGaGGCaaaGCUGGAg- -3'
miRNA:   3'- -CCGUUACguCCugCaCCG---UGGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 63492 0.66 0.983703
Target:  5'- uGGCAaugGUGguGGAgGUGGagaUGGugGa -3'
miRNA:   3'- -CCGU---UACguCCUgCACCgugGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 71689 0.67 0.97784
Target:  5'- aGGCAuAUGCuGaACGUGGUACauuGGACu -3'
miRNA:   3'- -CCGU-UACGuCcUGCACCGUGg--CCUGc -5'
32775 5' -56.7 NC_007346.1 + 73462 0.68 0.951128
Target:  5'- uGGaGGUGCAGGAUuUGGUGCCGcaaaGGCGa -3'
miRNA:   3'- -CCgUUACGUCCUGcACCGUGGC----CUGC- -5'
32775 5' -56.7 NC_007346.1 + 87719 0.66 0.986901
Target:  5'- uGCAGUGCAGaGAUGaUGGaUACUGGGu- -3'
miRNA:   3'- cCGUUACGUC-CUGC-ACC-GUGGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 110137 0.67 0.970552
Target:  5'- aGCGAUGCAcGugGUGGCugaCGGGu- -3'
miRNA:   3'- cCGUUACGUcCugCACCGug-GCCUgc -5'
32775 5' -56.7 NC_007346.1 + 128038 0.76 0.620004
Target:  5'- uGGCGGUGgAGGACuUGGCGgUGGugGa -3'
miRNA:   3'- -CCGUUACgUCCUGcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 128068 0.71 0.877759
Target:  5'- uGGUAAUGguGGugGUaauGGCGgaGGACu -3'
miRNA:   3'- -CCGUUACguCCugCA---CCGUggCCUGc -5'
32775 5' -56.7 NC_007346.1 + 128179 0.7 0.896821
Target:  5'- cGGUGAUGguGGugGUGG-ACUuGGugGa -3'
miRNA:   3'- -CCGUUACguCCugCACCgUGG-CCugC- -5'
32775 5' -56.7 NC_007346.1 + 128260 0.66 0.981897
Target:  5'- cGGUGAUGguGGugGcggugauggUGGCGgCGG-CGa -3'
miRNA:   3'- -CCGUUACguCCugC---------ACCGUgGCCuGC- -5'
32775 5' -56.7 NC_007346.1 + 128314 0.71 0.873739
Target:  5'- uGGCGAUGguGGugGacuuggugguggcgaUGGCGgUGGugGu -3'
miRNA:   3'- -CCGUUACguCCugC---------------ACCGUgGCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.