miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 401578 0.7 0.902781
Target:  5'- uGGCcGUGCAGGugGUuguugagcGGCGCCcGcGGCu -3'
miRNA:   3'- -CCGuUACGUCCugCA--------CCGUGG-C-CUGc -5'
32775 5' -56.7 NC_007346.1 + 361643 0.67 0.975577
Target:  5'- cGGUAAUGCGGaGAacCGcGGCgguccaugaACCGGAUGu -3'
miRNA:   3'- -CCGUUACGUC-CU--GCaCCG---------UGGCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 353137 0.67 0.97784
Target:  5'- cGCAAUGCAcGuGAauCGaUGGCACCcGGugGc -3'
miRNA:   3'- cCGUUACGU-C-CU--GC-ACCGUGG-CCugC- -5'
32775 5' -56.7 NC_007346.1 + 349796 0.7 0.902781
Target:  5'- cGGCGGUgGCGGcGGCGgcGGCGgCGGugGc -3'
miRNA:   3'- -CCGUUA-CGUC-CUGCa-CCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 322983 0.69 0.919443
Target:  5'- uGGCuucgGUGCAGGcauACGUGGUGCa-GACGa -3'
miRNA:   3'- -CCGu---UACGUCC---UGCACCGUGgcCUGC- -5'
32775 5' -56.7 NC_007346.1 + 314684 0.73 0.772051
Target:  5'- gGGCGGUGguGGAUauugggcagggggugGUGGUugUGGugGa -3'
miRNA:   3'- -CCGUUACguCCUG---------------CACCGugGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 311738 0.71 0.871022
Target:  5'- cGGUAAUgGC-GGugGUGGCGgUGGugGc -3'
miRNA:   3'- -CCGUUA-CGuCCugCACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 311699 0.7 0.914093
Target:  5'- uGGCAGUG-GGGAuUGUGGUGgCGGAUGu -3'
miRNA:   3'- -CCGUUACgUCCU-GCACCGUgGCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 311570 0.67 0.97784
Target:  5'- aGGCAGUgGCGGaGAuUGUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUA-CGUC-CU-GCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 311475 0.73 0.759747
Target:  5'- uGGCGGuggaguUGguGGAgGaGGCACCGGugGu -3'
miRNA:   3'- -CCGUU------ACguCCUgCaCCGUGGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 311418 0.68 0.961689
Target:  5'- aGGUAGUGgAGGAgaUGGCGgCGGAgGc -3'
miRNA:   3'- -CCGUUACgUCCUgcACCGUgGCCUgC- -5'
32775 5' -56.7 NC_007346.1 + 310408 0.68 0.961689
Target:  5'- uGGCGAUGUagaGGGAgGUGGCGga-GACGg -3'
miRNA:   3'- -CCGUUACG---UCCUgCACCGUggcCUGC- -5'
32775 5' -56.7 NC_007346.1 + 310345 0.71 0.849718
Target:  5'- aGGCGAgGguGGugGUgauGGCGgCGGACu -3'
miRNA:   3'- -CCGUUaCguCCugCA---CCGUgGCCUGc -5'
32775 5' -56.7 NC_007346.1 + 310267 0.71 0.849718
Target:  5'- gGGCAAUGgCGGcGGCGgauuUGGCGgCGGugGu -3'
miRNA:   3'- -CCGUUAC-GUC-CUGC----ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 310120 0.67 0.97315
Target:  5'- aGGCAGUgGCGGaGA--UGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUA-CGUC-CUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 309979 0.81 0.363912
Target:  5'- cGGCAAUGguGGugGagauggcggugggGGCACCGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCa------------CCGUGGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 309937 0.68 0.951128
Target:  5'- cGGCAAUGguGGugGaggagauggUGGCGgCGGuaAUGg -3'
miRNA:   3'- -CCGUUACguCCugC---------ACCGUgGCC--UGC- -5'
32775 5' -56.7 NC_007346.1 + 309901 0.66 0.986901
Target:  5'- nGGUAAUGguGGugGaggagaUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 309844 0.69 0.924586
Target:  5'- uGGCGGUGgAgauggcGGugGUaauggcgauggaGGCACCGGugGu -3'
miRNA:   3'- -CCGUUACgU------CCugCA------------CCGUGGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 309796 0.8 0.421793
Target:  5'- aGGCAAUGguGGugGUGGCGauggaGGugGa -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgg---CCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.