Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32775 | 5' | -56.7 | NC_007346.1 | + | 180691 | 0.68 | 0.954844 |
Target: 5'- aGGCAGUgaagGCGGaGAcCGUGggccGCACUGGACa -3' miRNA: 3'- -CCGUUA----CGUC-CU-GCAC----CGUGGCCUGc -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 311570 | 0.67 | 0.97784 |
Target: 5'- aGGCAGUgGCGGaGAuUGUGGCGgUGGAg- -3' miRNA: 3'- -CCGUUA-CGUC-CU-GCACCGUgGCCUgc -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 184756 | 0.67 | 0.97784 |
Target: 5'- uGGUGAUGgGGGugGUGGgGagGGugGc -3' miRNA: 3'- -CCGUUACgUCCugCACCgUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 189251 | 0.67 | 0.975577 |
Target: 5'- uGGUggaGAUGguGGugGUGGUGauGGugGu -3' miRNA: 3'- -CCG---UUACguCCugCACCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 201197 | 0.67 | 0.97315 |
Target: 5'- uGGUGAUGguGGuguaGaUGGUACCggGGACGg -3' miRNA: 3'- -CCGUUACguCCug--C-ACCGUGG--CCUGC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 310120 | 0.67 | 0.97315 |
Target: 5'- aGGCAGUgGCGGaGA--UGGCGgCGGugGa -3' miRNA: 3'- -CCGUUA-CGUC-CUgcACCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 128719 | 0.67 | 0.964827 |
Target: 5'- cGGCGGcgGUGGcGGCgGUGGCGgCGGugGu -3' miRNA: 3'- -CCGUUa-CGUC-CUG-CACCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 310408 | 0.68 | 0.961689 |
Target: 5'- uGGCGAUGUagaGGGAgGUGGCGga-GACGg -3' miRNA: 3'- -CCGUUACG---UCCUgCACCGUggcCUGC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 311418 | 0.68 | 0.961689 |
Target: 5'- aGGUAGUGgAGGAgaUGGCGgCGGAgGc -3' miRNA: 3'- -CCGUUACgUCCUgcACCGUgGCCUgC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 71689 | 0.67 | 0.97784 |
Target: 5'- aGGCAuAUGCuGaACGUGGUACauuGGACu -3' miRNA: 3'- -CCGU-UACGuCcUGCACCGUGg--CCUGc -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 353137 | 0.67 | 0.97784 |
Target: 5'- cGCAAUGCAcGuGAauCGaUGGCACCcGGugGc -3' miRNA: 3'- cCGUUACGU-C-CU--GC-ACCGUGG-CCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 189221 | 0.66 | 0.979945 |
Target: 5'- uGGUGAUGgAGGugGcGGCGgugaCGGugGu -3' miRNA: 3'- -CCGUUACgUCCugCaCCGUg---GCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 260148 | 0.66 | 0.986901 |
Target: 5'- uGCGAaacgacGCAGGAgGUGGUAaaggCGGugGg -3' miRNA: 3'- cCGUUa-----CGUCCUgCACCGUg---GCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 188052 | 0.66 | 0.986901 |
Target: 5'- aGGUGAggGUGGcGGCGUgGGCGgCGGugGg -3' miRNA: 3'- -CCGUUa-CGUC-CUGCA-CCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 309901 | 0.66 | 0.986901 |
Target: 5'- nGGUAAUGguGGugGaggagaUGGCGgUGGAg- -3' miRNA: 3'- -CCGUUACguCCugC------ACCGUgGCCUgc -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 63492 | 0.66 | 0.983703 |
Target: 5'- uGGCAaugGUGguGGAgGUGGagaUGGugGa -3' miRNA: 3'- -CCGU---UACguCCUgCACCgugGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 128455 | 0.66 | 0.983703 |
Target: 5'- uGGCGccugccaccAUGguGGAgGcGGCGgCGGugGa -3' miRNA: 3'- -CCGU---------UACguCCUgCaCCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 244773 | 0.66 | 0.983703 |
Target: 5'- cGGCGAUGCAGuGGCcauuuagGGaACUGGugGc -3' miRNA: 3'- -CCGUUACGUC-CUGca-----CCgUGGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 128260 | 0.66 | 0.981897 |
Target: 5'- cGGUGAUGguGGugGcggugauggUGGCGgCGG-CGa -3' miRNA: 3'- -CCGUUACguCCugC---------ACCGUgGCCuGC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 188013 | 0.66 | 0.981897 |
Target: 5'- cGGCGGUGacggGGGugGgGGCGacggCGGAUGa -3' miRNA: 3'- -CCGUUACg---UCCugCaCCGUg---GCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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