miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 198602 0.69 0.929523
Target:  5'- gGGUGAUGguGGugGUGGagaUGGugGc -3'
miRNA:   3'- -CCGUUACguCCugCACCgugGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 188136 0.69 0.926586
Target:  5'- uGGCGGUG-GGGACGguggaggaggugagGGCGgCGGugGg -3'
miRNA:   3'- -CCGUUACgUCCUGCa-------------CCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 309844 0.69 0.924586
Target:  5'- uGGCGGUGgAgauggcGGugGUaauggcgauggaGGCACCGGugGu -3'
miRNA:   3'- -CCGUUACgU------CCugCA------------CCGUGGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 189389 0.69 0.924586
Target:  5'- aGGCGAUGgAGGugGcggugaUGGUGgCGGugGu -3'
miRNA:   3'- -CCGUUACgUCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197808 0.69 0.924586
Target:  5'- aGGCGAUGguGG-CgGUGGCGauggCGGugGc -3'
miRNA:   3'- -CCGUUACguCCuG-CACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 322983 0.69 0.919443
Target:  5'- uGGCuucgGUGCAGGcauACGUGGUGCa-GACGa -3'
miRNA:   3'- -CCGu---UACGUCC---UGCACCGUGgcCUGC- -5'
32775 5' -56.7 NC_007346.1 + 198051 0.7 0.914093
Target:  5'- uGGCGGUGguGGAgaUGGUGgCGGugGu -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 311699 0.7 0.914093
Target:  5'- uGGCAGUG-GGGAuUGUGGUGgCGGAUGu -3'
miRNA:   3'- -CCGUUACgUCCU-GCACCGUgGCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 198219 0.7 0.914093
Target:  5'- uGGCGGUGguGGAgaUGGUGgCGGugGu -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 128545 0.7 0.914093
Target:  5'- uGGCGAUGCAGa---UGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUACGUCcugcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 201023 0.7 0.914093
Target:  5'- uGGCGGUGaaaauGGugGUGGUugACuCGGugGa -3'
miRNA:   3'- -CCGUUACgu---CCugCACCG--UG-GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 201149 0.7 0.908538
Target:  5'- aGGCGGUGCAgauGGugGUgcagauGGUACUGGAg- -3'
miRNA:   3'- -CCGUUACGU---CCugCA------CCGUGGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 61125 0.7 0.908538
Target:  5'- aGGCGGaGgAGGugGUgauGGCGCCGGugaugGCGg -3'
miRNA:   3'- -CCGUUaCgUCCugCA---CCGUGGCC-----UGC- -5'
32775 5' -56.7 NC_007346.1 + 306320 0.7 0.908538
Target:  5'- gGGCGGUGgAGG-CGgagaUGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUACgUCCuGC----ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 401578 0.7 0.902781
Target:  5'- uGGCcGUGCAGGugGUuguugagcGGCGCCcGcGGCu -3'
miRNA:   3'- -CCGuUACGUCCugCA--------CCGUGG-C-CUGc -5'
32775 5' -56.7 NC_007346.1 + 306227 0.7 0.902781
Target:  5'- uGGCGGUGgAGGAgaUGGCgguggagucGCCGGugGu -3'
miRNA:   3'- -CCGUUACgUCCUgcACCG---------UGGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 197958 0.7 0.902781
Target:  5'- uGGCGGUGguGGugGagaUGGUGgUGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC---ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 349796 0.7 0.902781
Target:  5'- cGGCGGUgGCGGcGGCGgcGGCGgCGGugGc -3'
miRNA:   3'- -CCGUUA-CGUC-CUGCa-CCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 178710 0.7 0.896821
Target:  5'- uGGUGAUGguGGAaGUGGCGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCUgCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 128179 0.7 0.896821
Target:  5'- cGGUGAUGguGGugGUGG-ACUuGGugGa -3'
miRNA:   3'- -CCGUUACguCCugCACCgUGG-CCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.