Results 41 - 60 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32775 | 5' | -56.7 | NC_007346.1 | + | 198255 | 0.76 | 0.601013 |
Target: 5'- cGGUGAUGguGGugGUGGCGgUGGAg- -3' miRNA: 3'- -CCGUUACguCCugCACCGUgGCCUgc -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 308693 | 0.71 | 0.849718 |
Target: 5'- aGGUAAUGguGGugGcGGCAauGGugGu -3' miRNA: 3'- -CCGUUACguCCugCaCCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 188942 | 0.71 | 0.842269 |
Target: 5'- uGGUGAUGguGGugGUGGUGauGGugGc -3' miRNA: 3'- -CCGUUACguCCugCACCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 128617 | 0.72 | 0.826882 |
Target: 5'- uGGCGGUGgAGGugGUGGaGgUGGugGa -3' miRNA: 3'- -CCGUUACgUCCugCACCgUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 189287 | 0.72 | 0.826882 |
Target: 5'- uGGUGAUGguGGugGUGGUGauGGugGu -3' miRNA: 3'- -CCGUUACguCCugCACCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 180864 | 0.72 | 0.810883 |
Target: 5'- uGGCGGUGgAGGugGgggaaauaaUGGCGuuGGugGa -3' miRNA: 3'- -CCGUUACgUCCugC---------ACCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 306045 | 0.72 | 0.802671 |
Target: 5'- aGGCGGaagggGguGGACGUGGCGgUGGAg- -3' miRNA: 3'- -CCGUUa----CguCCUGCACCGUgGCCUgc -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 307842 | 0.73 | 0.768556 |
Target: 5'- uGGUAAUGguGGugGaggagaUGGCGgCGGugGa -3' miRNA: 3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 314684 | 0.73 | 0.772051 |
Target: 5'- gGGCGGUGguGGAUauugggcagggggugGUGGUugUGGugGa -3' miRNA: 3'- -CCGUUACguCCUG---------------CACCGugGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 189521 | 0.73 | 0.794325 |
Target: 5'- cGGUGAUGguGGugGUGGagaCGGugGc -3' miRNA: 3'- -CCGUUACguCCugCACCgugGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 189251 | 0.67 | 0.975577 |
Target: 5'- uGGUggaGAUGguGGugGUGGUGauGGugGu -3' miRNA: 3'- -CCG---UUACguCCugCACCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 200852 | 0.69 | 0.929523 |
Target: 5'- aGGUGuUGguGGugGcGGCAUUGGugGa -3' miRNA: 3'- -CCGUuACguCCugCaCCGUGGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 184756 | 0.67 | 0.97784 |
Target: 5'- uGGUGAUGgGGGugGUGGgGagGGugGc -3' miRNA: 3'- -CCGUUACgUCCugCACCgUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 311699 | 0.7 | 0.914093 |
Target: 5'- uGGCAGUG-GGGAuUGUGGUGgCGGAUGu -3' miRNA: 3'- -CCGUUACgUCCU-GCACCGUgGCCUGC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 311570 | 0.67 | 0.97784 |
Target: 5'- aGGCAGUgGCGGaGAuUGUGGCGgUGGAg- -3' miRNA: 3'- -CCGUUA-CGUC-CU-GCACCGUgGCCUgc -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 244773 | 0.66 | 0.983703 |
Target: 5'- cGGCGAUGCAGuGGCcauuuagGGaACUGGugGc -3' miRNA: 3'- -CCGUUACGUC-CUGca-----CCgUGGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 322983 | 0.69 | 0.919443 |
Target: 5'- uGGCuucgGUGCAGGcauACGUGGUGCa-GACGa -3' miRNA: 3'- -CCGu---UACGUCC---UGCACCGUGgcCUGC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 189389 | 0.69 | 0.924586 |
Target: 5'- aGGCGAUGgAGGugGcggugaUGGUGgCGGugGu -3' miRNA: 3'- -CCGUUACgUCCugC------ACCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 309844 | 0.69 | 0.924586 |
Target: 5'- uGGCGGUGgAgauggcGGugGUaauggcgauggaGGCACCGGugGu -3' miRNA: 3'- -CCGUUACgU------CCugCA------------CCGUGGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 188136 | 0.69 | 0.926586 |
Target: 5'- uGGCGGUG-GGGACGguggaggaggugagGGCGgCGGugGg -3' miRNA: 3'- -CCGUUACgUCCUGCa-------------CCGUgGCCugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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