Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32777 | 3' | -54.4 | NC_007346.1 | + | 86225 | 0.7 | 0.947374 |
Target: 5'- gUGUUGUUaaauagaaGCUCCGccgauacgacuggaUCGCgACCACCAa -3' miRNA: 3'- uGCAACAA--------CGAGGU--------------AGCGgUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 127909 | 0.7 | 0.948601 |
Target: 5'- -------cGCcaCCAUCGCCACCACCGc -3' miRNA: 3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 181426 | 0.7 | 0.956291 |
Target: 5'- -------cGCcgCCAUUGCCACCGCCAc -3' miRNA: 3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 349388 | 0.69 | 0.963159 |
Target: 5'- -------cGCcgUCGUCGCCACCACCAa -3' miRNA: 3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 59239 | 0.69 | 0.963159 |
Target: 5'- -----aUUGcCUCCAUCGCCAuauCCGCCAc -3' miRNA: 3'- ugcaacAAC-GAGGUAGCGGU---GGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 198189 | 0.69 | 0.966294 |
Target: 5'- -------cGCcuccaccgCCAUCGCCACCACCAc -3' miRNA: 3'- ugcaacaaCGa-------GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 189004 | 0.69 | 0.969236 |
Target: 5'- cCGUcaccGCcaccaCCGUCGCCGCCACCAc -3' miRNA: 3'- uGCAacaaCGa----GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 60236 | 0.69 | 0.97036 |
Target: 5'- aACGUUGUaauuacuccacucagUcgauCUCCAUCuCCACCACCAc -3' miRNA: 3'- -UGCAACA---------------Ac---GAGGUAGcGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 198219 | 0.68 | 0.976958 |
Target: 5'- -------cGCcuccaccgCCAUCGCCACCGCCAc -3' miRNA: 3'- ugcaacaaCGa-------GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 50411 | 0.68 | 0.976958 |
Target: 5'- ----------aCCAUCGCCACCACCAc -3' miRNA: 3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 127874 | 0.68 | 0.976958 |
Target: 5'- ----------gCCAUCGCCACCACCAa -3' miRNA: 3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 270231 | 0.68 | 0.983151 |
Target: 5'- cCGccGUUGCcaCCGUCaccaccaauGCCACCACCAu -3' miRNA: 3'- uGCaaCAACGa-GGUAG---------CGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 188473 | 0.68 | 0.983151 |
Target: 5'- ----------aCCAUCGCCGCCACCAu -3' miRNA: 3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 166006 | 0.68 | 0.983151 |
Target: 5'- ----cGUcGCcaccaucgCCAUCGCCGCCACCu -3' miRNA: 3'- ugcaaCAaCGa-------GGUAGCGGUGGUGGu -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 142133 | 0.68 | 0.984907 |
Target: 5'- ---aUG-UGCUgCGUCGCUAUCACCGg -3' miRNA: 3'- ugcaACaACGAgGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 188443 | 0.68 | 0.984907 |
Target: 5'- ----------aCCAUCGCCACCGCCAc -3' miRNA: 3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 205578 | 0.67 | 0.986519 |
Target: 5'- uGCGUauc-GCggaCCGUUGCCGCCAUCAa -3' miRNA: 3'- -UGCAacaaCGa--GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 188389 | 0.67 | 0.987996 |
Target: 5'- ----------aCCAUCGCCACCACCGu -3' miRNA: 3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 127807 | 0.67 | 0.987996 |
Target: 5'- -------cGCcaccaCCGUCGCCGCCGCCAc -3' miRNA: 3'- ugcaacaaCGa----GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 390612 | 0.67 | 0.987996 |
Target: 5'- cGCGUUuaUGCUCgCGUaUGCC-CCACCGg -3' miRNA: 3'- -UGCAAcaACGAG-GUA-GCGGuGGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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