miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 3' -54.4 NC_007346.1 + 306798 0.75 0.764945
Target:  5'- --------cCUCCAUCGCCACCACCAc -3'
miRNA:   3'- ugcaacaacGAGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 311009 0.75 0.755845
Target:  5'- --------cCUCCAUCGCCACCACCAu -3'
miRNA:   3'- ugcaacaacGAGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 188389 0.67 0.987996
Target:  5'- ----------aCCAUCGCCACCACCGu -3'
miRNA:   3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 308136 0.66 0.995791
Target:  5'- ------cUGCUCCAcCGCCAucuCCACCGc -3'
miRNA:   3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 390612 0.67 0.987996
Target:  5'- cGCGUUuaUGCUCgCGUaUGCC-CCACCGg -3'
miRNA:   3'- -UGCAAcaACGAG-GUA-GCGGuGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 37786 0.66 0.995791
Target:  5'- aAUGUUGaUGCUCUuauAUCGUCACUGgCAa -3'
miRNA:   3'- -UGCAACaACGAGG---UAGCGGUGGUgGU- -5'
32777 3' -54.4 NC_007346.1 + 307863 0.66 0.995791
Target:  5'- ------cUGCUCCAcCGCCAucuCCACCGc -3'
miRNA:   3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 200466 0.67 0.991685
Target:  5'- -------cGCcaCCGUUGCCACCACCAc -3'
miRNA:   3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 349338 0.66 0.995142
Target:  5'- aAUGUUauccUGCUgCCucaCGCCACCGCCGc -3'
miRNA:   3'- -UGCAAca--ACGA-GGua-GCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 307330 0.66 0.995791
Target:  5'- ------cUGCUCCAcCGCCAucuCCACCGc -3'
miRNA:   3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 127807 0.67 0.987996
Target:  5'- -------cGCcaccaCCGUCGCCGCCGCCAc -3'
miRNA:   3'- ugcaacaaCGa----GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 329890 0.75 0.737352
Target:  5'- --aUUGUcUGCUCCAUCGCCAuuauCCACCc -3'
miRNA:   3'- ugcAACA-ACGAGGUAGCGGU----GGUGGu -5'
32777 3' -54.4 NC_007346.1 + 306690 0.75 0.737352
Target:  5'- aGCGUggacugUGCcccuucgCCGUCGCCGCCGCCGc -3'
miRNA:   3'- -UGCAaca---ACGa------GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 200016 0.66 0.995142
Target:  5'- uUGUUGgcGCgCCAUCGUCuccuCCAUCAc -3'
miRNA:   3'- uGCAACaaCGaGGUAGCGGu---GGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 180507 0.66 0.994413
Target:  5'- --------uCUCCAUCGCCuCCACCAu -3'
miRNA:   3'- ugcaacaacGAGGUAGCGGuGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 199274 0.73 0.856264
Target:  5'- -------cGCcgCCAUCGCCGCCGCCAu -3'
miRNA:   3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 50411 0.68 0.976958
Target:  5'- ----------aCCAUCGCCACCACCAc -3'
miRNA:   3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 50432 0.72 0.877644
Target:  5'- -------cGCcucgCCAUCGCCACCACCAc -3'
miRNA:   3'- ugcaacaaCGa---GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 160819 0.72 0.884377
Target:  5'- -aGUUGUUGCUCauggacauauUCGCCGCCAUa- -3'
miRNA:   3'- ugCAACAACGAGgu--------AGCGGUGGUGgu -5'
32777 3' -54.4 NC_007346.1 + 198246 0.71 0.930658
Target:  5'- -------cGCcaccgCCAUCGCCACCGCCAc -3'
miRNA:   3'- ugcaacaaCGa----GGUAGCGGUGGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.