miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 3' -54.4 NC_007346.1 + 188365 0.75 0.773938
Target:  5'- ---aUGUU-CUCCAccaUCGCCACCACCAc -3'
miRNA:   3'- ugcaACAAcGAGGU---AGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 349388 0.69 0.963159
Target:  5'- -------cGCcgUCGUCGCCACCACCAa -3'
miRNA:   3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 127874 0.68 0.976958
Target:  5'- ----------gCCAUCGCCACCACCAa -3'
miRNA:   3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 308136 0.66 0.995791
Target:  5'- ------cUGCUCCAcCGCCAucuCCACCGc -3'
miRNA:   3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 310927 0.72 0.884377
Target:  5'- gAUGagUGUgcccccacCUCCGUCGCCGCCGCCu -3'
miRNA:   3'- -UGCa-ACAac------GAGGUAGCGGUGGUGGu -5'
32777 3' -54.4 NC_007346.1 + 309396 0.72 0.890906
Target:  5'- cCGg---UGcCUCCAUCGCCAUUACCAc -3'
miRNA:   3'- uGCaacaAC-GAGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 306690 0.75 0.737352
Target:  5'- aGCGUggacugUGCcccuucgCCGUCGCCGCCGCCGc -3'
miRNA:   3'- -UGCAaca---ACGa------GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 329890 0.75 0.737352
Target:  5'- --aUUGUcUGCUCCAUCGCCAuuauCCACCc -3'
miRNA:   3'- ugcAACA-ACGAGGUAGCGGU----GGUGGu -5'
32777 3' -54.4 NC_007346.1 + 311009 0.75 0.755845
Target:  5'- --------cCUCCAUCGCCACCACCAu -3'
miRNA:   3'- ugcaacaacGAGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 181426 0.7 0.956291
Target:  5'- -------cGCcgCCAUUGCCACCGCCAc -3'
miRNA:   3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 189064 0.7 0.940061
Target:  5'- cCGUUaccaccaGCUCCAUCaCCGCCACCGu -3'
miRNA:   3'- uGCAAcaa----CGAGGUAGcGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 238487 0.71 0.920382
Target:  5'- gACGaUGgagGCgagUUCAUCGCCGCCAUCAg -3'
miRNA:   3'- -UGCaACaa-CG---AGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 309310 0.73 0.841077
Target:  5'- -------aGC-CCGUCGCCGCCACCAa -3'
miRNA:   3'- ugcaacaaCGaGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 86225 0.7 0.947374
Target:  5'- gUGUUGUUaaauagaaGCUCCGccgauacgacuggaUCGCgACCACCAa -3'
miRNA:   3'- uGCAACAA--------CGAGGU--------------AGCGgUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 306744 0.72 0.870711
Target:  5'- -------aGC-CCGUCGCCGCCGCCAa -3'
miRNA:   3'- ugcaacaaCGaGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 181378 0.71 0.914917
Target:  5'- uAUGgggUGUUGUgagugauuuUCCGUcccCGCCACCGCCAc -3'
miRNA:   3'- -UGCa--ACAACG---------AGGUA---GCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 127909 0.7 0.948601
Target:  5'- -------cGCcaCCAUCGCCACCACCGc -3'
miRNA:   3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 189004 0.69 0.969236
Target:  5'- cCGUcaccGCcaccaCCGUCGCCGCCACCAc -3'
miRNA:   3'- uGCAacaaCGa----GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 309256 0.72 0.870711
Target:  5'- aGCGUggacugUGUcccuucgCCGUCGCCGCCGCCGc -3'
miRNA:   3'- -UGCAaca---ACGa------GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 309364 0.72 0.903338
Target:  5'- --------cCUCCAUCGCCACCACCc -3'
miRNA:   3'- ugcaacaacGAGGUAGCGGUGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.