miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 3' -54.4 NC_007346.1 + 204908 0.66 0.995791
Target:  5'- gGCGcUUGuUUGUUUCGUCGCCACaCAaCAg -3'
miRNA:   3'- -UGC-AAC-AACGAGGUAGCGGUG-GUgGU- -5'
32777 3' -54.4 NC_007346.1 + 166046 1.08 0.011707
Target:  5'- aACGUUGUUGCUCCAUCGCCACCACCAu -3'
miRNA:   3'- -UGCAACAACGAGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 198066 0.74 0.791569
Target:  5'- -------cGCcgCCAUCGCCACCACCAu -3'
miRNA:   3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 199274 0.73 0.856264
Target:  5'- -------cGCcgCCAUCGCCGCCGCCAu -3'
miRNA:   3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 50432 0.72 0.877644
Target:  5'- -------cGCcucgCCAUCGCCACCACCAc -3'
miRNA:   3'- ugcaacaaCGa---GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 160819 0.72 0.884377
Target:  5'- -aGUUGUUGCUCauggacauauUCGCCGCCAUa- -3'
miRNA:   3'- ugCAACAACGAGgu--------AGCGGUGGUGgu -5'
32777 3' -54.4 NC_007346.1 + 198246 0.71 0.930658
Target:  5'- -------cGCcaccgCCAUCGCCACCGCCAc -3'
miRNA:   3'- ugcaacaaCGa----GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 59239 0.69 0.963159
Target:  5'- -----aUUGcCUCCAUCGCCAuauCCGCCAc -3'
miRNA:   3'- ugcaacAAC-GAGGUAGCGGU---GGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 198189 0.69 0.966294
Target:  5'- -------cGCcuccaccgCCAUCGCCACCACCAc -3'
miRNA:   3'- ugcaacaaCGa-------GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 60236 0.69 0.97036
Target:  5'- aACGUUGUaauuacuccacucagUcgauCUCCAUCuCCACCACCAc -3'
miRNA:   3'- -UGCAACA---------------Ac---GAGGUAGcGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 198520 0.66 0.994413
Target:  5'- --------uCUCCAcCGCCACCACCAc -3'
miRNA:   3'- ugcaacaacGAGGUaGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 198688 0.66 0.994413
Target:  5'- --------uCUCCAcCGCCACCACCAc -3'
miRNA:   3'- ugcaacaacGAGGUaGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 58498 0.67 0.989344
Target:  5'- --------cCUUCGUCGCCACCGCCGu -3'
miRNA:   3'- ugcaacaacGAGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 205578 0.67 0.986519
Target:  5'- uGCGUauc-GCggaCCGUUGCCGCCAUCAa -3'
miRNA:   3'- -UGCAacaaCGa--GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 166006 0.68 0.983151
Target:  5'- ----cGUcGCcaccaucgCCAUCGCCGCCACCu -3'
miRNA:   3'- ugcaaCAaCGa-------GGUAGCGGUGGUGGu -5'
32777 3' -54.4 NC_007346.1 + 50411 0.68 0.976958
Target:  5'- ----------aCCAUCGCCACCACCAc -3'
miRNA:   3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 198219 0.68 0.976958
Target:  5'- -------cGCcuccaccgCCAUCGCCACCGCCAc -3'
miRNA:   3'- ugcaacaaCGa-------GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 308136 0.66 0.995791
Target:  5'- ------cUGCUCCAcCGCCAucuCCACCGc -3'
miRNA:   3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 329890 0.75 0.737352
Target:  5'- --aUUGUcUGCUCCAUCGCCAuuauCCACCc -3'
miRNA:   3'- ugcAACA-ACGAGGUAGCGGU----GGUGGu -5'
32777 3' -54.4 NC_007346.1 + 311009 0.75 0.755845
Target:  5'- --------cCUCCAUCGCCACCACCAu -3'
miRNA:   3'- ugcaacaacGAGGUAGCGGUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.