miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 3' -54.4 NC_007346.1 + 37786 0.66 0.995791
Target:  5'- aAUGUUGaUGCUCUuauAUCGUCACUGgCAa -3'
miRNA:   3'- -UGCAACaACGAGG---UAGCGGUGGUgGU- -5'
32777 3' -54.4 NC_007346.1 + 50411 0.68 0.976958
Target:  5'- ----------aCCAUCGCCACCACCAc -3'
miRNA:   3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 50432 0.72 0.877644
Target:  5'- -------cGCcucgCCAUCGCCACCACCAc -3'
miRNA:   3'- ugcaacaaCGa---GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 58498 0.67 0.989344
Target:  5'- --------cCUUCGUCGCCACCGCCGu -3'
miRNA:   3'- ugcaacaacGAGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 59239 0.69 0.963159
Target:  5'- -----aUUGcCUCCAUCGCCAuauCCGCCAc -3'
miRNA:   3'- ugcaacAAC-GAGGUAGCGGU---GGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 60236 0.69 0.97036
Target:  5'- aACGUUGUaauuacuccacucagUcgauCUCCAUCuCCACCACCAc -3'
miRNA:   3'- -UGCAACA---------------Ac---GAGGUAGcGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 86225 0.7 0.947374
Target:  5'- gUGUUGUUaaauagaaGCUCCGccgauacgacuggaUCGCgACCACCAa -3'
miRNA:   3'- uGCAACAA--------CGAGGU--------------AGCGgUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 127807 0.67 0.987996
Target:  5'- -------cGCcaccaCCGUCGCCGCCGCCAc -3'
miRNA:   3'- ugcaacaaCGa----GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 127874 0.68 0.976958
Target:  5'- ----------gCCAUCGCCACCACCAa -3'
miRNA:   3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 127909 0.7 0.948601
Target:  5'- -------cGCcaCCAUCGCCACCACCGc -3'
miRNA:   3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 142133 0.68 0.984907
Target:  5'- ---aUG-UGCUgCGUCGCUAUCACCGg -3'
miRNA:   3'- ugcaACaACGAgGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 160819 0.72 0.884377
Target:  5'- -aGUUGUUGCUCauggacauauUCGCCGCCAUa- -3'
miRNA:   3'- ugCAACAACGAGgu--------AGCGGUGGUGgu -5'
32777 3' -54.4 NC_007346.1 + 166006 0.68 0.983151
Target:  5'- ----cGUcGCcaccaucgCCAUCGCCGCCACCu -3'
miRNA:   3'- ugcaaCAaCGa-------GGUAGCGGUGGUGGu -5'
32777 3' -54.4 NC_007346.1 + 166046 1.08 0.011707
Target:  5'- aACGUUGUUGCUCCAUCGCCACCACCAu -3'
miRNA:   3'- -UGCAACAACGAGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 180507 0.66 0.994413
Target:  5'- --------uCUCCAUCGCCuCCACCAu -3'
miRNA:   3'- ugcaacaacGAGGUAGCGGuGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 181378 0.71 0.914917
Target:  5'- uAUGgggUGUUGUgagugauuuUCCGUcccCGCCACCGCCAc -3'
miRNA:   3'- -UGCa--ACAACG---------AGGUA---GCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 181426 0.7 0.956291
Target:  5'- -------cGCcgCCAUUGCCACCGCCAc -3'
miRNA:   3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 188365 0.75 0.773938
Target:  5'- ---aUGUU-CUCCAccaUCGCCACCACCAc -3'
miRNA:   3'- ugcaACAAcGAGGU---AGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 188389 0.67 0.987996
Target:  5'- ----------aCCAUCGCCACCACCGu -3'
miRNA:   3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5'
32777 3' -54.4 NC_007346.1 + 188443 0.68 0.984907
Target:  5'- ----------aCCAUCGCCACCGCCAc -3'
miRNA:   3'- ugcaacaacgaGGUAGCGGUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.