Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32777 | 3' | -54.4 | NC_007346.1 | + | 390612 | 0.67 | 0.987996 |
Target: 5'- cGCGUUuaUGCUCgCGUaUGCC-CCACCGg -3' miRNA: 3'- -UGCAAcaACGAG-GUA-GCGGuGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 349388 | 0.69 | 0.963159 |
Target: 5'- -------cGCcgUCGUCGCCACCACCAa -3' miRNA: 3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 349338 | 0.66 | 0.995142 |
Target: 5'- aAUGUUauccUGCUgCCucaCGCCACCGCCGc -3' miRNA: 3'- -UGCAAca--ACGA-GGua-GCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 329890 | 0.75 | 0.737352 |
Target: 5'- --aUUGUcUGCUCCAUCGCCAuuauCCACCc -3' miRNA: 3'- ugcAACA-ACGAGGUAGCGGU----GGUGGu -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 311009 | 0.75 | 0.755845 |
Target: 5'- --------cCUCCAUCGCCACCACCAu -3' miRNA: 3'- ugcaacaacGAGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 310927 | 0.72 | 0.884377 |
Target: 5'- gAUGagUGUgcccccacCUCCGUCGCCGCCGCCu -3' miRNA: 3'- -UGCa-ACAac------GAGGUAGCGGUGGUGGu -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 309396 | 0.72 | 0.890906 |
Target: 5'- cCGg---UGcCUCCAUCGCCAUUACCAc -3' miRNA: 3'- uGCaacaAC-GAGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 309364 | 0.72 | 0.903338 |
Target: 5'- --------cCUCCAUCGCCACCACCc -3' miRNA: 3'- ugcaacaacGAGGUAGCGGUGGUGGu -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 309310 | 0.73 | 0.841077 |
Target: 5'- -------aGC-CCGUCGCCGCCACCAa -3' miRNA: 3'- ugcaacaaCGaGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 309256 | 0.72 | 0.870711 |
Target: 5'- aGCGUggacugUGUcccuucgCCGUCGCCGCCGCCGc -3' miRNA: 3'- -UGCAaca---ACGa------GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 308136 | 0.66 | 0.995791 |
Target: 5'- ------cUGCUCCAcCGCCAucuCCACCGc -3' miRNA: 3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 307863 | 0.66 | 0.995791 |
Target: 5'- ------cUGCUCCAcCGCCAucuCCACCGc -3' miRNA: 3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 307330 | 0.66 | 0.995791 |
Target: 5'- ------cUGCUCCAcCGCCAucuCCACCGc -3' miRNA: 3'- ugcaacaACGAGGUaGCGGU---GGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 306798 | 0.75 | 0.764945 |
Target: 5'- --------cCUCCAUCGCCACCACCAc -3' miRNA: 3'- ugcaacaacGAGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 306744 | 0.72 | 0.870711 |
Target: 5'- -------aGC-CCGUCGCCGCCGCCAa -3' miRNA: 3'- ugcaacaaCGaGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 306690 | 0.75 | 0.737352 |
Target: 5'- aGCGUggacugUGCcccuucgCCGUCGCCGCCGCCGc -3' miRNA: 3'- -UGCAaca---ACGa------GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 270231 | 0.68 | 0.983151 |
Target: 5'- cCGccGUUGCcaCCGUCaccaccaauGCCACCACCAu -3' miRNA: 3'- uGCaaCAACGa-GGUAG---------CGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 238487 | 0.71 | 0.920382 |
Target: 5'- gACGaUGgagGCgagUUCAUCGCCGCCAUCAg -3' miRNA: 3'- -UGCaACaa-CG---AGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 205578 | 0.67 | 0.986519 |
Target: 5'- uGCGUauc-GCggaCCGUUGCCGCCAUCAa -3' miRNA: 3'- -UGCAacaaCGa--GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 204908 | 0.66 | 0.995791 |
Target: 5'- gGCGcUUGuUUGUUUCGUCGCCACaCAaCAg -3' miRNA: 3'- -UGC-AAC-AACGAGGUAGCGGUG-GUgGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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