Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 198289 | 0.68 | 0.960622 |
Target: 5'- -----cCGCCACCAUCuCCAcCGCCa -3' miRNA: 3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 198328 | 0.78 | 0.497684 |
Target: 5'- -----cCGCCACCAUCGCCAccaUCGCCu -3' miRNA: 3'- gaagcaGCGGUGGUAGCGGU---AGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 198496 | 0.68 | 0.960622 |
Target: 5'- -----cCGCCACCAUCaCCAcCGCCa -3' miRNA: 3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 198574 | 0.66 | 0.987814 |
Target: 5'- -----cCGCCACCAUCacccccaccaCCAUCGCCc -3' miRNA: 3'- gaagcaGCGGUGGUAGc---------GGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 198664 | 0.68 | 0.960622 |
Target: 5'- -----cCGCCACCAUCaCCAcCGCCa -3' miRNA: 3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 198742 | 0.66 | 0.987814 |
Target: 5'- -----cCGCCACCAUCacccccaccaCCAUCGCCc -3' miRNA: 3'- gaagcaGCGGUGGUAGc---------GGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 198850 | 0.69 | 0.923055 |
Target: 5'- -aUCucCGCCACCAccaccaccacCGCCAUCGCCu -3' miRNA: 3'- gaAGcaGCGGUGGUa---------GCGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 199225 | 0.69 | 0.941767 |
Target: 5'- ----aUCuCCGCCAcCGCCAUCGCCc -3' miRNA: 3'- gaagcAGcGGUGGUaGCGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 199248 | 0.69 | 0.937396 |
Target: 5'- -----cCGCCACCAUcucCGCCAcCGCCa -3' miRNA: 3'- gaagcaGCGGUGGUA---GCGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 199275 | 0.77 | 0.580364 |
Target: 5'- -----cCGCCGCCAUCGCCGcCGCCa -3' miRNA: 3'- gaagcaGCGGUGGUAGCGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 200141 | 0.72 | 0.824836 |
Target: 5'- --cCGcCGCCACCAUcacCGCCAUCauuGCCa -3' miRNA: 3'- gaaGCaGCGGUGGUA---GCGGUAG---CGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 200218 | 0.69 | 0.92804 |
Target: 5'- ----aUCGCCAUCAcCGCCAcCGCCa -3' miRNA: 3'- gaagcAGCGGUGGUaGCGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 200258 | 0.75 | 0.646595 |
Target: 5'- --cCGUCGCCAUCAcCGCCAUCuCCa -3' miRNA: 3'- gaaGCAGCGGUGGUaGCGGUAGcGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 200465 | 0.7 | 0.906869 |
Target: 5'- -----cCGCCACCGUUGCCAccaccaccauggUCGCCc -3' miRNA: 3'- gaagcaGCGGUGGUAGCGGU------------AGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 200798 | 0.68 | 0.960622 |
Target: 5'- uUUCacCGCCACCAUCGCCGgaaCCa -3' miRNA: 3'- gAAGcaGCGGUGGUAGCGGUagcGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 238501 | 0.66 | 0.983083 |
Target: 5'- gUUCaUCGCCGCCAUCaGCUcgcaucaucccaGUCGUCc -3' miRNA: 3'- gAAGcAGCGGUGGUAG-CGG------------UAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 238723 | 0.73 | 0.759409 |
Target: 5'- --cCGUCGCCggucgaaggugagccACCGUCGCCAgucgcagaugagCGCCGu -3' miRNA: 3'- gaaGCAGCGG---------------UGGUAGCGGUa-----------GCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 238774 | 0.69 | 0.930933 |
Target: 5'- --cCGUCaUCGCCGgucgcagaugagcCGCCAUCGCCGg -3' miRNA: 3'- gaaGCAGcGGUGGUa------------GCGGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 238898 | 0.7 | 0.906869 |
Target: 5'- -aUCGUCGCCcauGCgcUCGCCuUCGCCc -3' miRNA: 3'- gaAGCAGCGG---UGguAGCGGuAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 242463 | 0.69 | 0.932821 |
Target: 5'- ----aUCGCCGCCuUUGCCAcCGCCu -3' miRNA: 3'- gaagcAGCGGUGGuAGCGGUaGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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