miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 128118 0.69 0.923055
Target:  5'- --cCGcCGCCAUcugCAUCGCCAUCaCCGc -3'
miRNA:   3'- gaaGCaGCGGUG---GUAGCGGUAGcGGC- -5'
32777 5' -56.8 NC_007346.1 + 128286 0.76 0.637112
Target:  5'- --cCGcCGCCACCGcCGCCAcCGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUaGCGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 164891 0.67 0.97229
Target:  5'- -aUCGcuuaGaCCAUCAUCGUCAUCGUCa -3'
miRNA:   3'- gaAGCag--C-GGUGGUAGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 166010 1.08 0.00878
Target:  5'- cCUUCGUCGCCACCAUCGCCAUCGCCGc -3'
miRNA:   3'- -GAAGCAGCGGUGGUAGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 166043 0.73 0.766448
Target:  5'- -gUUGUUGCU-CCAUCGCCAccaccaUCGCCGc -3'
miRNA:   3'- gaAGCAGCGGuGGUAGCGGU------AGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 179821 0.66 0.987814
Target:  5'- -cUCGUCaauuucgaGagGCCAUCGUCAUUGCUGg -3'
miRNA:   3'- gaAGCAG--------CggUGGUAGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 181425 0.74 0.712315
Target:  5'- -----cCGCCGCCAUUGCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 187566 0.76 0.599213
Target:  5'- --cCGUCGCC-UCAUcCGCCGUCGCCc -3'
miRNA:   3'- gaaGCAGCGGuGGUA-GCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 187649 0.67 0.97708
Target:  5'- --cCGcCGCCGCCcaCGCCGcCGCCc -3'
miRNA:   3'- gaaGCaGCGGUGGuaGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 187969 0.77 0.552343
Target:  5'- ----aUCGCCGCCucCGCCAUCGCCGc -3'
miRNA:   3'- gaagcAGCGGUGGuaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 188377 0.71 0.869124
Target:  5'- ----aUCGCCACCAcCaCCAUCGCCa -3'
miRNA:   3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 188446 0.72 0.832628
Target:  5'- -aUCGccacCGCCACCAUCaccaccaccaCCAUCGCCGc -3'
miRNA:   3'- gaAGCa---GCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 188953 0.66 0.981232
Target:  5'- -----cCGCCACCAUcacCGCCAccuccaUCGCCu -3'
miRNA:   3'- gaagcaGCGGUGGUA---GCGGU------AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 189004 0.69 0.92804
Target:  5'- --cCGUCaCCGCCAcCaCCGUCGCCGc -3'
miRNA:   3'- gaaGCAGcGGUGGUaGcGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 189112 0.68 0.945935
Target:  5'- -----cCGCCGCCAUCuCCAcCGCCGc -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 189497 0.71 0.875895
Target:  5'- --cCGUcacCGCCACCAUCaCCGcCGCCGu -3'
miRNA:   3'- gaaGCA---GCGGUGGUAGcGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 198071 0.76 0.637112
Target:  5'- -aUCGcCGCCGCCAUCGCCAcCaCCa -3'
miRNA:   3'- gaAGCaGCGGUGGUAGCGGUaGcGGc -5'
32777 5' -56.8 NC_007346.1 + 198124 0.73 0.766448
Target:  5'- -----cCGCCACCAUcuccaccacCGCCAUCGCCu -3'
miRNA:   3'- gaagcaGCGGUGGUA---------GCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 198199 0.75 0.693724
Target:  5'- -----cCGCCACCAUCGCCuccaccgccAUCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGG---------UAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 198236 0.78 0.524743
Target:  5'- -aUCGccacCGCCACCAUCGCCuccaccgccAUCGCCa -3'
miRNA:   3'- gaAGCa---GCGGUGGUAGCGG---------UAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.