miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 307167 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 272017 0.7 0.900477
Target:  5'- -gUCGUguaccacCGCCACCAcCGCCAccucCGCCa -3'
miRNA:   3'- gaAGCA-------GCGGUGGUaGCGGUa---GCGGc -5'
32777 5' -56.8 NC_007346.1 + 200141 0.72 0.824836
Target:  5'- --cCGcCGCCACCAUcacCGCCAUCauuGCCa -3'
miRNA:   3'- gaaGCaGCGGUGGUA---GCGGUAG---CGGc -5'
32777 5' -56.8 NC_007346.1 + 187566 0.76 0.599213
Target:  5'- --cCGUCGCC-UCAUcCGCCGUCGCCc -3'
miRNA:   3'- gaaGCAGCGGuGGUA-GCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 200218 0.69 0.92804
Target:  5'- ----aUCGCCAUCAcCGCCAcCGCCa -3'
miRNA:   3'- gaagcAGCGGUGGUaGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 309498 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 329920 0.71 0.87855
Target:  5'- -aUCGUCGUCAUCGuccgaaucgggaaguUCGUCcgCGCCGu -3'
miRNA:   3'- gaAGCAGCGGUGGU---------------AGCGGuaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 309277 0.77 0.561643
Target:  5'- --cCGUCGCCGCCGcCGCCGagccCGCCGc -3'
miRNA:   3'- gaaGCAGCGGUGGUaGCGGUa---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 308240 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 306711 0.77 0.561643
Target:  5'- --cCGUCGCCGCCGcCGCCGagccCGCCGc -3'
miRNA:   3'- gaaGCAGCGGUGGUaGCGGUa---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 270225 0.7 0.895068
Target:  5'- --cCGUCaCCGCCGUUGCCAcCGUCa -3'
miRNA:   3'- gaaGCAGcGGUGGUAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 307439 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 127862 0.71 0.869124
Target:  5'- ----aUCaCCACCAcCGCCAUCGCCa -3'
miRNA:   3'- gaagcAGcGGUGGUaGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 188446 0.72 0.832628
Target:  5'- -aUCGccacCGCCACCAUCaccaccaccaCCAUCGCCGc -3'
miRNA:   3'- gaAGCa---GCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 311204 0.75 0.665523
Target:  5'- -----cCGCCGCCAUCuCCAUCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 128286 0.76 0.637112
Target:  5'- --cCGcCGCCACCGcCGCCAcCGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUaGCGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 309843 0.69 0.942193
Target:  5'- --cCGcCGCCGCCAUUGCCcccaccaccgucacCGCCGu -3'
miRNA:   3'- gaaGCaGCGGUGGUAGCGGua------------GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 242463 0.69 0.932821
Target:  5'- ----aUCGCCGCCuUUGCCAcCGCCu -3'
miRNA:   3'- gaagcAGCGGUGGuAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 309313 0.69 0.923055
Target:  5'- --cCGUCGCCGCCAccaaGuCCAcCGCCa -3'
miRNA:   3'- gaaGCAGCGGUGGUag--C-GGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 200465 0.7 0.906869
Target:  5'- -----cCGCCACCGUUGCCAccaccaccauggUCGCCc -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGGU------------AGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.