miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 127890 0.82 0.344165
Target:  5'- ---aGUCcaCCACCAUCGCCAUCGCCa -3'
miRNA:   3'- gaagCAGc-GGUGGUAGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 189497 0.71 0.875895
Target:  5'- --cCGUcacCGCCACCAUCaCCGcCGCCGu -3'
miRNA:   3'- gaaGCA---GCGGUGGUAGcGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 329920 0.71 0.87855
Target:  5'- -aUCGUCGUCAUCGuccgaaucgggaaguUCGUCcgCGCCGu -3'
miRNA:   3'- gaAGCAGCGGUGGU---------------AGCGGuaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 323635 0.66 0.987814
Target:  5'- --gUGUaagUGUC-CCAaCGCCGUCGCCGa -3'
miRNA:   3'- gaaGCA---GCGGuGGUaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 309277 0.77 0.561643
Target:  5'- --cCGUCGCCGCCGcCGCCGagccCGCCGc -3'
miRNA:   3'- gaaGCAGCGGUGGUaGCGGUa---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 187566 0.76 0.599213
Target:  5'- --cCGUCGCC-UCAUcCGCCGUCGCCc -3'
miRNA:   3'- gaaGCAGCGGuGGUA-GCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 200258 0.75 0.646595
Target:  5'- --cCGUCGCCAUCAcCGCCAUCuCCa -3'
miRNA:   3'- gaaGCAGCGGUGGUaGCGGUAGcGGc -5'
32777 5' -56.8 NC_007346.1 + 309644 0.75 0.656067
Target:  5'- -aUCucCGCCGCCAUCuCCAUCGCCa -3'
miRNA:   3'- gaAGcaGCGGUGGUAGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 127916 0.73 0.757639
Target:  5'- ----aUCGCCACCAcCGCCAUcucCGCCGc -3'
miRNA:   3'- gaagcAGCGGUGGUaGCGGUA---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 127862 0.71 0.869124
Target:  5'- ----aUCaCCACCAcCGCCAUCGCCa -3'
miRNA:   3'- gaagcAGcGGUGGUaGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 188446 0.72 0.832628
Target:  5'- -aUCGccacCGCCACCAUCaccaccaccaCCAUCGCCGc -3'
miRNA:   3'- gaAGCa---GCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 181425 0.74 0.712315
Target:  5'- -----cCGCCGCCAUUGCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 349375 0.78 0.497684
Target:  5'- --cCGcCGCCACCGcCGCCGUCGUCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 304708 0.71 0.85504
Target:  5'- aUUC-UCGCCACCGaCGCUGcCGCCGu -3'
miRNA:   3'- gAAGcAGCGGUGGUaGCGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 187969 0.77 0.552343
Target:  5'- ----aUCGCCGCCucCGCCAUCGCCGc -3'
miRNA:   3'- gaagcAGCGGUGGuaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 311204 0.75 0.665523
Target:  5'- -----cCGCCGCCAUCuCCAUCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 188377 0.71 0.869124
Target:  5'- ----aUCGCCACCAcCaCCAUCGCCa -3'
miRNA:   3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 127806 0.71 0.875895
Target:  5'- --cCGcCaCCACCGUCGCCGcCGCCa -3'
miRNA:   3'- gaaGCaGcGGUGGUAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 306711 0.77 0.561643
Target:  5'- --cCGUCGCCGCCGcCGCCGagccCGCCGc -3'
miRNA:   3'- gaaGCAGCGGUGGUaGCGGUa---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 128286 0.76 0.637112
Target:  5'- --cCGcCGCCACCGcCGCCAcCGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUaGCGGUaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.