miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 60158 0.69 0.92804
Target:  5'- -----cCGCCACCAUCaCCAcCGCCGc -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 198664 0.68 0.960622
Target:  5'- -----cCGCCACCAUCaCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 392456 0.68 0.949902
Target:  5'- ---aGUCGCCgaGCCAgucacugaGCCAgUCGCCGa -3'
miRNA:   3'- gaagCAGCGG--UGGUag------CGGU-AGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 61615 0.68 0.945935
Target:  5'- --cCGgCGCCACCucCGCCuUCGCCu -3'
miRNA:   3'- gaaGCaGCGGUGGuaGCGGuAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 199225 0.69 0.941767
Target:  5'- ----aUCuCCGCCAcCGCCAUCGCCc -3'
miRNA:   3'- gaagcAGcGGUGGUaGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 199248 0.69 0.937396
Target:  5'- -----cCGCCACCAUcucCGCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUA---GCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 273046 0.69 0.932821
Target:  5'- -gUCGUCGCCGaaacacaCGUCGCCA-C-CCGa -3'
miRNA:   3'- gaAGCAGCGGUg------GUAGCGGUaGcGGC- -5'
32777 5' -56.8 NC_007346.1 + 391071 0.69 0.932821
Target:  5'- uCUUC-UUGgCAUCGUCGUCAUCgGCCGg -3'
miRNA:   3'- -GAAGcAGCgGUGGUAGCGGUAG-CGGC- -5'
32777 5' -56.8 NC_007346.1 + 238774 0.69 0.930933
Target:  5'- --cCGUCaUCGCCGgucgcagaugagcCGCCAUCGCCGg -3'
miRNA:   3'- gaaGCAGcGGUGGUa------------GCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 198496 0.68 0.960622
Target:  5'- -----cCGCCACCAUCaCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 198289 0.68 0.960622
Target:  5'- -----cCGCCACCAUCuCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 259241 0.67 0.963812
Target:  5'- uUUCGUCGCCAugcCCAUCGaCGaaacCGUCGa -3'
miRNA:   3'- gAAGCAGCGGU---GGUAGCgGUa---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 198574 0.66 0.987814
Target:  5'- -----cCGCCACCAUCacccccaccaCCAUCGCCc -3'
miRNA:   3'- gaagcaGCGGUGGUAGc---------GGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 198742 0.66 0.987814
Target:  5'- -----cCGCCACCAUCacccccaccaCCAUCGCCc -3'
miRNA:   3'- gaagcaGCGGUGGUAGc---------GGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 266283 0.66 0.986368
Target:  5'- aUUCugaGCCAUUuUCGCCGUCGUCa -3'
miRNA:   3'- gAAGcagCGGUGGuAGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 57182 0.66 0.984793
Target:  5'- -----cCGCCAUCAcCGCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUaGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 55176 0.67 0.97708
Target:  5'- gUUCGUCaUCAUCAUCGCCAaacUUGCg- -3'
miRNA:   3'- gAAGCAGcGGUGGUAGCGGU---AGCGgc -5'
32777 5' -56.8 NC_007346.1 + 401520 0.67 0.97708
Target:  5'- --cCGcCGCCugCAgcuGCCAUCGCgGc -3'
miRNA:   3'- gaaGCaGCGGugGUag-CGGUAGCGgC- -5'
32777 5' -56.8 NC_007346.1 + 57885 0.67 0.974768
Target:  5'- -aUCucCGCCACCGcCGUUAUUGCCGc -3'
miRNA:   3'- gaAGcaGCGGUGGUaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 110567 0.67 0.97229
Target:  5'- --cCGUCaGCCACCA-CGUgCAUCGCUc -3'
miRNA:   3'- gaaGCAG-CGGUGGUaGCG-GUAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.