miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 38112 0.66 0.987814
Target:  5'- uCUUCGUCGUCACUAgaugCGCCAauuUCa--- -3'
miRNA:   3'- -GAAGCAGCGGUGGUa---GCGGU---AGcggc -5'
32777 5' -56.8 NC_007346.1 + 50446 0.8 0.388859
Target:  5'- --gCGUCGCCACaauccgccUCGCCAUCGCCa -3'
miRNA:   3'- gaaGCAGCGGUGgu------AGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 55176 0.67 0.97708
Target:  5'- gUUCGUCaUCAUCAUCGCCAaacUUGCg- -3'
miRNA:   3'- gAAGCAGcGGUGGUAGCGGU---AGCGgc -5'
32777 5' -56.8 NC_007346.1 + 57182 0.66 0.984793
Target:  5'- -----cCGCCAUCAcCGCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUaGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 57885 0.67 0.974768
Target:  5'- -aUCucCGCCACCGcCGUUAUUGCCGc -3'
miRNA:   3'- gaAGcaGCGGUGGUaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 57956 0.76 0.627627
Target:  5'- --cCGUCGCCAaguccgccuCCAUCGCCGccucccUCGCCa -3'
miRNA:   3'- gaaGCAGCGGU---------GGUAGCGGU------AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 58498 0.78 0.515658
Target:  5'- cCUUCGUCGCCACC---GCCGUCaCCGa -3'
miRNA:   3'- -GAAGCAGCGGUGGuagCGGUAGcGGC- -5'
32777 5' -56.8 NC_007346.1 + 59257 0.69 0.925074
Target:  5'- -aUCGUuuucuccaccgccauUGCCuCCAUCGCCAUaucCGCCa -3'
miRNA:   3'- gaAGCA---------------GCGGuGGUAGCGGUA---GCGGc -5'
32777 5' -56.8 NC_007346.1 + 60158 0.69 0.92804
Target:  5'- -----cCGCCACCAUCaCCAcCGCCGc -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 61615 0.68 0.945935
Target:  5'- --cCGgCGCCACCucCGCCuUCGCCu -3'
miRNA:   3'- gaaGCaGCGGUGGuaGCGGuAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 110567 0.67 0.97229
Target:  5'- --cCGUCaGCCACCA-CGUgCAUCGCUc -3'
miRNA:   3'- gaaGCAG-CGGUGGUaGCG-GUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 124770 0.7 0.906869
Target:  5'- gUUCGUCGCCA-CAUCGUCGUUuaCa -3'
miRNA:   3'- gAAGCAGCGGUgGUAGCGGUAGcgGc -5'
32777 5' -56.8 NC_007346.1 + 126006 0.73 0.766448
Target:  5'- -gUCGUCGUCAUCAUCGUCAUCaUCa -3'
miRNA:   3'- gaAGCAGCGGUGGUAGCGGUAGcGGc -5'
32777 5' -56.8 NC_007346.1 + 127779 0.67 0.969642
Target:  5'- --cCGUCaCCGCCAUCuCCGcCGCCa -3'
miRNA:   3'- gaaGCAGcGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 127806 0.71 0.875895
Target:  5'- --cCGcCaCCACCGUCGCCGcCGCCa -3'
miRNA:   3'- gaaGCaGcGGUGGUAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 127862 0.71 0.869124
Target:  5'- ----aUCaCCACCAcCGCCAUCGCCa -3'
miRNA:   3'- gaagcAGcGGUGGUaGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 127890 0.82 0.344165
Target:  5'- ---aGUCcaCCACCAUCGCCAUCGCCa -3'
miRNA:   3'- gaagCAGc-GGUGGUAGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 127916 0.73 0.757639
Target:  5'- ----aUCGCCACCAcCGCCAUcucCGCCGc -3'
miRNA:   3'- gaagcAGCGGUGGUaGCGGUA---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 127956 0.68 0.955123
Target:  5'- cCUUCGcCGCCGCCGcCGCCuccaccaugguggcaGgCGCCa -3'
miRNA:   3'- -GAAGCaGCGGUGGUaGCGG---------------UaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 128067 0.66 0.983783
Target:  5'- -----cCGCCGCCAUcaaucucaccuucgcCGCCGUCGUCu -3'
miRNA:   3'- gaagcaGCGGUGGUA---------------GCGGUAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.