miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 401520 0.67 0.97708
Target:  5'- --cCGcCGCCugCAgcuGCCAUCGCgGc -3'
miRNA:   3'- gaaGCaGCGGugGUag-CGGUAGCGgC- -5'
32777 5' -56.8 NC_007346.1 + 392456 0.68 0.949902
Target:  5'- ---aGUCGCCgaGCCAgucacugaGCCAgUCGCCGa -3'
miRNA:   3'- gaagCAGCGG--UGGUag------CGGU-AGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 391071 0.69 0.932821
Target:  5'- uCUUC-UUGgCAUCGUCGUCAUCgGCCGg -3'
miRNA:   3'- -GAAGcAGCgGUGGUAGCGGUAG-CGGC- -5'
32777 5' -56.8 NC_007346.1 + 349375 0.78 0.497684
Target:  5'- --cCGcCGCCACCGcCGCCGUCGUCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 329920 0.71 0.87855
Target:  5'- -aUCGUCGUCAUCGuccgaaucgggaaguUCGUCcgCGCCGu -3'
miRNA:   3'- gaAGCAGCGGUGGU---------------AGCGGuaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 329764 0.66 0.986368
Target:  5'- -cUCGUCGCCAaCAUCuuccUCAUCGUCu -3'
miRNA:   3'- gaAGCAGCGGUgGUAGc---GGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 323635 0.66 0.987814
Target:  5'- --gUGUaagUGUC-CCAaCGCCGUCGCCGa -3'
miRNA:   3'- gaaGCA---GCGGuGGUaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 316271 0.72 0.816894
Target:  5'- aCUUUGUCuCCuCCuGUCGCCAUUGCCu -3'
miRNA:   3'- -GAAGCAGcGGuGG-UAGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 311312 0.69 0.937396
Target:  5'- -----cCGCCACCAcCGCCAUuacCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUaGCGGUA---GCGGc -5'
32777 5' -56.8 NC_007346.1 + 311240 0.69 0.923055
Target:  5'- aUUCcacCGCCACCAUCuCCAcCGCCa -3'
miRNA:   3'- gAAGca-GCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 311204 0.75 0.665523
Target:  5'- -----cCGCCGCCAUCuCCAUCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 310946 0.68 0.945935
Target:  5'- --cCGUCGCCGCCGccuucUCuGCCGucaagcucacccUCGCCu -3'
miRNA:   3'- gaaGCAGCGGUGGU-----AG-CGGU------------AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 310026 0.66 0.981232
Target:  5'- --cCGUCaccacccCCACCAUcCGCC-UCGCCa -3'
miRNA:   3'- gaaGCAGc------GGUGGUA-GCGGuAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 309972 0.66 0.983083
Target:  5'- --cCGUcucCGCCACCucccucuacAUCGCCAUCcCCa -3'
miRNA:   3'- gaaGCA---GCGGUGG---------UAGCGGUAGcGGc -5'
32777 5' -56.8 NC_007346.1 + 309909 0.67 0.974768
Target:  5'- ---aGUcCGCCGCCAUCaCCAccacccUCGCCu -3'
miRNA:   3'- gaagCA-GCGGUGGUAGcGGU------AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 309843 0.69 0.942193
Target:  5'- --cCGcCGCCGCCAUUGCCcccaccaccgucacCGCCGu -3'
miRNA:   3'- gaaGCaGCGGUGGUAGCGGua------------GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 309672 0.66 0.984793
Target:  5'- --cCGcCGCCACCAaCuCCAcCGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUaGcGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 309644 0.75 0.656067
Target:  5'- -aUCucCGCCGCCAUCuCCAUCGCCa -3'
miRNA:   3'- gaAGcaGCGGUGGUAGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 309566 0.66 0.981232
Target:  5'- -aUUGcCGCCACCAccaUUGCCuccacCGCCa -3'
miRNA:   3'- gaAGCaGCGGUGGU---AGCGGua---GCGGc -5'
32777 5' -56.8 NC_007346.1 + 309498 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.