miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 166010 1.08 0.00878
Target:  5'- cCUUCGUCGCCACCAUCGCCAUCGCCGc -3'
miRNA:   3'- -GAAGCAGCGGUGGUAGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 127890 0.82 0.344165
Target:  5'- ---aGUCcaCCACCAUCGCCAUCGCCa -3'
miRNA:   3'- gaagCAGc-GGUGGUAGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 50446 0.8 0.388859
Target:  5'- --gCGUCGCCACaauccgccUCGCCAUCGCCa -3'
miRNA:   3'- gaaGCAGCGGUGgu------AGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 349375 0.78 0.497684
Target:  5'- --cCGcCGCCACCGcCGCCGUCGUCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 198328 0.78 0.497684
Target:  5'- -----cCGCCACCAUCGCCAccaUCGCCu -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGGU---AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 58498 0.78 0.515658
Target:  5'- cCUUCGUCGCCACC---GCCGUCaCCGa -3'
miRNA:   3'- -GAAGCAGCGGUGGuagCGGUAGcGGC- -5'
32777 5' -56.8 NC_007346.1 + 198236 0.78 0.524743
Target:  5'- -aUCGccacCGCCACCAUCGCCuccaccgccAUCGCCa -3'
miRNA:   3'- gaAGCa---GCGGUGGUAGCGG---------UAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 187969 0.77 0.552343
Target:  5'- ----aUCGCCGCCucCGCCAUCGCCGc -3'
miRNA:   3'- gaagcAGCGGUGGuaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 306711 0.77 0.561643
Target:  5'- --cCGUCGCCGCCGcCGCCGagccCGCCGc -3'
miRNA:   3'- gaaGCAGCGGUGGUaGCGGUa---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 309277 0.77 0.561643
Target:  5'- --cCGUCGCCGCCGcCGCCGagccCGCCGc -3'
miRNA:   3'- gaaGCAGCGGUGGUaGCGGUa---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 199275 0.77 0.580364
Target:  5'- -----cCGCCGCCAUCGCCGcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 187566 0.76 0.599213
Target:  5'- --cCGUCGCC-UCAUcCGCCGUCGCCc -3'
miRNA:   3'- gaaGCAGCGGuGGUA-GCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 57956 0.76 0.627627
Target:  5'- --cCGUCGCCAaguccgccuCCAUCGCCGccucccUCGCCa -3'
miRNA:   3'- gaaGCAGCGGU---------GGUAGCGGU------AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 198071 0.76 0.637112
Target:  5'- -aUCGcCGCCGCCAUCGCCAcCaCCa -3'
miRNA:   3'- gaAGCaGCGGUGGUAGCGGUaGcGGc -5'
32777 5' -56.8 NC_007346.1 + 128286 0.76 0.637112
Target:  5'- --cCGcCGCCACCGcCGCCAcCGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUaGCGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 200258 0.75 0.646595
Target:  5'- --cCGUCGCCAUCAcCGCCAUCuCCa -3'
miRNA:   3'- gaaGCAGCGGUGGUaGCGGUAGcGGc -5'
32777 5' -56.8 NC_007346.1 + 309644 0.75 0.656067
Target:  5'- -aUCucCGCCGCCAUCuCCAUCGCCa -3'
miRNA:   3'- gaAGcaGCGGUGGUAGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 311204 0.75 0.665523
Target:  5'- -----cCGCCGCCAUCuCCAUCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 198199 0.75 0.693724
Target:  5'- -----cCGCCACCAUCGCCuccaccgccAUCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGG---------UAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 181425 0.74 0.712315
Target:  5'- -----cCGCCGCCAUUGCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGGUaGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.