miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 127916 0.73 0.757639
Target:  5'- ----aUCGCCACCAcCGCCAUcucCGCCGc -3'
miRNA:   3'- gaagcAGCGGUGGUaGCGGUA---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 238723 0.73 0.759409
Target:  5'- --cCGUCGCCggucgaaggugagccACCGUCGCCAgucgcagaugagCGCCGu -3'
miRNA:   3'- gaaGCAGCGG---------------UGGUAGCGGUa-----------GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 126006 0.73 0.766448
Target:  5'- -gUCGUCGUCAUCAUCGUCAUCaUCa -3'
miRNA:   3'- gaAGCAGCGGUGGUAGCGGUAGcGGc -5'
32777 5' -56.8 NC_007346.1 + 198124 0.73 0.766448
Target:  5'- -----cCGCCACCAUcuccaccacCGCCAUCGCCu -3'
miRNA:   3'- gaagcaGCGGUGGUA---------GCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 166043 0.73 0.766448
Target:  5'- -gUUGUUGCU-CCAUCGCCAccaccaUCGCCGc -3'
miRNA:   3'- gaAGCAGCGGuGGUAGCGGU------AGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 316271 0.72 0.816894
Target:  5'- aCUUUGUCuCCuCCuGUCGCCAUUGCCu -3'
miRNA:   3'- -GAAGCAGcGGuGG-UAGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 200141 0.72 0.824836
Target:  5'- --cCGcCGCCACCAUcacCGCCAUCauuGCCa -3'
miRNA:   3'- gaaGCaGCGGUGGUA---GCGGUAG---CGGc -5'
32777 5' -56.8 NC_007346.1 + 188446 0.72 0.832628
Target:  5'- -aUCGccacCGCCACCAUCaccaccaccaCCAUCGCCGc -3'
miRNA:   3'- gaAGCa---GCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 304708 0.71 0.85504
Target:  5'- aUUC-UCGCCACCGaCGCUGcCGCCGu -3'
miRNA:   3'- gAAGcAGCGGUGGUaGCGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 127862 0.71 0.869124
Target:  5'- ----aUCaCCACCAcCGCCAUCGCCa -3'
miRNA:   3'- gaagcAGcGGUGGUaGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 188377 0.71 0.869124
Target:  5'- ----aUCGCCACCAcCaCCAUCGCCa -3'
miRNA:   3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 189497 0.71 0.875895
Target:  5'- --cCGUcacCGCCACCAUCaCCGcCGCCGu -3'
miRNA:   3'- gaaGCA---GCGGUGGUAGcGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 127806 0.71 0.875895
Target:  5'- --cCGcCaCCACCGUCGCCGcCGCCa -3'
miRNA:   3'- gaaGCaGcGGUGGUAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 329920 0.71 0.87855
Target:  5'- -aUCGUCGUCAUCGuccgaaucgggaaguUCGUCcgCGCCGu -3'
miRNA:   3'- gaAGCAGCGGUGGU---------------AGCGGuaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 270225 0.7 0.895068
Target:  5'- --cCGUCaCCGCCGUUGCCAcCGUCa -3'
miRNA:   3'- gaaGCAGcGGUGGUAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 272017 0.7 0.900477
Target:  5'- -gUCGUguaccacCGCCACCAcCGCCAccucCGCCa -3'
miRNA:   3'- gaAGCA-------GCGGUGGUaGCGGUa---GCGGc -5'
32777 5' -56.8 NC_007346.1 + 307439 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 238898 0.7 0.906869
Target:  5'- -aUCGUCGCCcauGCgcUCGCCuUCGCCc -3'
miRNA:   3'- gaAGCAGCGG---UGguAGCGGuAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 124770 0.7 0.906869
Target:  5'- gUUCGUCGCCA-CAUCGUCGUUuaCa -3'
miRNA:   3'- gAAGCAGCGGUgGUAGCGGUAGcgGc -5'
32777 5' -56.8 NC_007346.1 + 307167 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.