miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 401520 0.67 0.97708
Target:  5'- --cCGcCGCCugCAgcuGCCAUCGCgGc -3'
miRNA:   3'- gaaGCaGCGGugGUag-CGGUAGCGgC- -5'
32777 5' -56.8 NC_007346.1 + 187649 0.67 0.97708
Target:  5'- --cCGcCGCCGCCcaCGCCGcCGCCc -3'
miRNA:   3'- gaaGCaGCGGUGGuaGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 55176 0.67 0.97708
Target:  5'- gUUCGUCaUCAUCAUCGCCAaacUUGCg- -3'
miRNA:   3'- gAAGCAGcGGUGGUAGCGGU---AGCGgc -5'
32777 5' -56.8 NC_007346.1 + 309909 0.67 0.974768
Target:  5'- ---aGUcCGCCGCCAUCaCCAccacccUCGCCu -3'
miRNA:   3'- gaagCA-GCGGUGGUAGcGGU------AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 57885 0.67 0.974768
Target:  5'- -aUCucCGCCACCGcCGUUAUUGCCGc -3'
miRNA:   3'- gaAGcaGCGGUGGUaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 309396 0.67 0.97229
Target:  5'- --cCGgUGCCuCCAUCGCCAUuaccacCGCCa -3'
miRNA:   3'- gaaGCaGCGGuGGUAGCGGUA------GCGGc -5'
32777 5' -56.8 NC_007346.1 + 110567 0.67 0.97229
Target:  5'- --cCGUCaGCCACCA-CGUgCAUCGCUc -3'
miRNA:   3'- gaaGCAG-CGGUGGUaGCG-GUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 164891 0.67 0.97229
Target:  5'- -aUCGcuuaGaCCAUCAUCGUCAUCGUCa -3'
miRNA:   3'- gaAGCag--C-GGUGGUAGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 306957 0.67 0.97229
Target:  5'- -----cCGCCGCCAUCuCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 127779 0.67 0.969642
Target:  5'- --cCGUCaCCGCCAUCuCCGcCGCCa -3'
miRNA:   3'- gaaGCAGcGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 306872 0.67 0.969642
Target:  5'- -aUCucCGCCGCCAUCuCCAcCGCCa -3'
miRNA:   3'- gaAGcaGCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 259241 0.67 0.963812
Target:  5'- uUUCGUCGCCAugcCCAUCGaCGaaacCGUCGa -3'
miRNA:   3'- gAAGCAGCGGU---GGUAGCgGUa---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 198289 0.68 0.960622
Target:  5'- -----cCGCCACCAUCuCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 200798 0.68 0.960622
Target:  5'- uUUCacCGCCACCAUCGCCGgaaCCa -3'
miRNA:   3'- gAAGcaGCGGUGGUAGCGGUagcGGc -5'
32777 5' -56.8 NC_007346.1 + 198664 0.68 0.960622
Target:  5'- -----cCGCCACCAUCaCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 198496 0.68 0.960622
Target:  5'- -----cCGCCACCAUCaCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 127956 0.68 0.955123
Target:  5'- cCUUCGcCGCCGCCGcCGCCuccaccaugguggcaGgCGCCa -3'
miRNA:   3'- -GAAGCaGCGGUGGUaGCGG---------------UaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 306747 0.68 0.95367
Target:  5'- --cCGUCGCCGCCGccaaGuCCAcCGCCa -3'
miRNA:   3'- gaaGCAGCGGUGGUag--C-GGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 392456 0.68 0.949902
Target:  5'- ---aGUCGCCgaGCCAgucacugaGCCAgUCGCCGa -3'
miRNA:   3'- gaagCAGCGG--UGGUag------CGGU-AGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 310946 0.68 0.945935
Target:  5'- --cCGUCGCCGCCGccuucUCuGCCGucaagcucacccUCGCCu -3'
miRNA:   3'- gaaGCAGCGGUGGU-----AG-CGGU------------AGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.