miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 310946 0.68 0.945935
Target:  5'- --cCGUCGCCGCCGccuucUCuGCCGucaagcucacccUCGCCu -3'
miRNA:   3'- gaaGCAGCGGUGGU-----AG-CGGU------------AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 61615 0.68 0.945935
Target:  5'- --cCGgCGCCACCucCGCCuUCGCCu -3'
miRNA:   3'- gaaGCaGCGGUGGuaGCGGuAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 309843 0.69 0.942193
Target:  5'- --cCGcCGCCGCCAUUGCCcccaccaccgucacCGCCGu -3'
miRNA:   3'- gaaGCaGCGGUGGUAGCGGua------------GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 199225 0.69 0.941767
Target:  5'- ----aUCuCCGCCAcCGCCAUCGCCc -3'
miRNA:   3'- gaagcAGcGGUGGUaGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 274105 0.69 0.937396
Target:  5'- aUUCGcCGCCuCCGaaUCGCCGaaauugCGCCGc -3'
miRNA:   3'- gAAGCaGCGGuGGU--AGCGGUa-----GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 199248 0.69 0.937396
Target:  5'- -----cCGCCACCAUcucCGCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUA---GCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 311312 0.69 0.937396
Target:  5'- -----cCGCCACCAcCGCCAUuacCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUaGCGGUA---GCGGc -5'
32777 5' -56.8 NC_007346.1 + 273046 0.69 0.932821
Target:  5'- -gUCGUCGCCGaaacacaCGUCGCCA-C-CCGa -3'
miRNA:   3'- gaAGCAGCGGUg------GUAGCGGUaGcGGC- -5'
32777 5' -56.8 NC_007346.1 + 391071 0.69 0.932821
Target:  5'- uCUUC-UUGgCAUCGUCGUCAUCgGCCGg -3'
miRNA:   3'- -GAAGcAGCgGUGGUAGCGGUAG-CGGC- -5'
32777 5' -56.8 NC_007346.1 + 242463 0.69 0.932821
Target:  5'- ----aUCGCCGCCuUUGCCAcCGCCu -3'
miRNA:   3'- gaagcAGCGGUGGuAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 238774 0.69 0.930933
Target:  5'- --cCGUCaUCGCCGgucgcagaugagcCGCCAUCGCCGg -3'
miRNA:   3'- gaaGCAGcGGUGGUa------------GCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 260719 0.69 0.92804
Target:  5'- --gCGUCGCC-CaacUCGCCAacUCGCCa -3'
miRNA:   3'- gaaGCAGCGGuGgu-AGCGGU--AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 200218 0.69 0.92804
Target:  5'- ----aUCGCCAUCAcCGCCAcCGCCa -3'
miRNA:   3'- gaagcAGCGGUGGUaGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 60158 0.69 0.92804
Target:  5'- -----cCGCCACCAUCaCCAcCGCCGc -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 189004 0.69 0.92804
Target:  5'- --cCGUCaCCGCCAcCaCCGUCGCCGc -3'
miRNA:   3'- gaaGCAGcGGUGGUaGcGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 59257 0.69 0.925074
Target:  5'- -aUCGUuuucuccaccgccauUGCCuCCAUCGCCAUaucCGCCa -3'
miRNA:   3'- gaAGCA---------------GCGGuGGUAGCGGUA---GCGGc -5'
32777 5' -56.8 NC_007346.1 + 309313 0.69 0.923055
Target:  5'- --cCGUCGCCGCCAccaaGuCCAcCGCCa -3'
miRNA:   3'- gaaGCAGCGGUGGUag--C-GGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 128118 0.69 0.923055
Target:  5'- --cCGcCGCCAUcugCAUCGCCAUCaCCGc -3'
miRNA:   3'- gaaGCaGCGGUG---GUAGCGGUAGcGGC- -5'
32777 5' -56.8 NC_007346.1 + 198850 0.69 0.923055
Target:  5'- -aUCucCGCCACCAccaccaccacCGCCAUCGCCu -3'
miRNA:   3'- gaAGcaGCGGUGGUa---------GCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 311240 0.69 0.923055
Target:  5'- aUUCcacCGCCACCAUCuCCAcCGCCa -3'
miRNA:   3'- gAAGca-GCGGUGGUAGcGGUaGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.