Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 309396 | 0.67 | 0.97229 |
Target: 5'- --cCGgUGCCuCCAUCGCCAUuaccacCGCCa -3' miRNA: 3'- gaaGCaGCGGuGGUAGCGGUA------GCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 189112 | 0.68 | 0.945935 |
Target: 5'- -----cCGCCGCCAUCuCCAcCGCCGc -3' miRNA: 3'- gaagcaGCGGUGGUAGcGGUaGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 307700 | 0.7 | 0.906869 |
Target: 5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 306957 | 0.67 | 0.97229 |
Target: 5'- -----cCGCCGCCAUCuCCAcCGCCa -3' miRNA: 3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 307439 | 0.7 | 0.906869 |
Target: 5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 238501 | 0.66 | 0.983083 |
Target: 5'- gUUCaUCGCCGCCAUCaGCUcgcaucaucccaGUCGUCc -3' miRNA: 3'- gAAGcAGCGGUGGUAG-CGG------------UAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 308240 | 0.7 | 0.906869 |
Target: 5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 309369 | 0.66 | 0.983083 |
Target: 5'- ----aUCGCCACCAcC-CCAUUGCCu -3' miRNA: 3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 292155 | 0.66 | 0.983083 |
Target: 5'- ---aGgCGCCACCAUCGCgcUCGgCGg -3' miRNA: 3'- gaagCaGCGGUGGUAGCGguAGCgGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 306803 | 0.66 | 0.981232 |
Target: 5'- ----aUCGCCACCAcCaCCAUUGCCu -3' miRNA: 3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 188953 | 0.66 | 0.981232 |
Target: 5'- -----cCGCCACCAUcacCGCCAccuccaUCGCCu -3' miRNA: 3'- gaagcaGCGGUGGUA---GCGGU------AGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 187649 | 0.67 | 0.97708 |
Target: 5'- --cCGcCGCCGCCcaCGCCGcCGCCc -3' miRNA: 3'- gaaGCaGCGGUGGuaGCGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 309909 | 0.67 | 0.974768 |
Target: 5'- ---aGUcCGCCGCCAUCaCCAccacccUCGCCu -3' miRNA: 3'- gaagCA-GCGGUGGUAGcGGU------AGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 306872 | 0.67 | 0.969642 |
Target: 5'- -aUCucCGCCGCCAUCuCCAcCGCCa -3' miRNA: 3'- gaAGcaGCGGUGGUAGcGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 127779 | 0.67 | 0.969642 |
Target: 5'- --cCGUCaCCGCCAUCuCCGcCGCCa -3' miRNA: 3'- gaaGCAGcGGUGGUAGcGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 127956 | 0.68 | 0.955123 |
Target: 5'- cCUUCGcCGCCGCCGcCGCCuccaccaugguggcaGgCGCCa -3' miRNA: 3'- -GAAGCaGCGGUGGUaGCGG---------------UaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 306747 | 0.68 | 0.95367 |
Target: 5'- --cCGUCGCCGCCGccaaGuCCAcCGCCa -3' miRNA: 3'- gaaGCAGCGGUGGUag--C-GGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 311312 | 0.69 | 0.937396 |
Target: 5'- -----cCGCCACCAcCGCCAUuacCGCCa -3' miRNA: 3'- gaagcaGCGGUGGUaGCGGUA---GCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 260719 | 0.69 | 0.92804 |
Target: 5'- --gCGUCGCC-CaacUCGCCAacUCGCCa -3' miRNA: 3'- gaaGCAGCGGuGgu-AGCGGU--AGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 311240 | 0.69 | 0.923055 |
Target: 5'- aUUCcacCGCCACCAUCuCCAcCGCCa -3' miRNA: 3'- gAAGca-GCGGUGGUAGcGGUaGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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