miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32782 3' -54.4 NC_007346.1 + 175927 0.67 0.988715
Target:  5'- uUGGAUGaAUUGGGAUGAUGAUa---- -3'
miRNA:   3'- uACCUGC-UGACCCUACUACUGcucga -5'
32782 3' -54.4 NC_007346.1 + 266910 0.67 0.988715
Target:  5'- uUGGGUGACcauuuaGGGAacUGGUGGCGAGUUg -3'
miRNA:   3'- uACCUGCUGa-----CCCU--ACUACUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 189352 0.67 0.988715
Target:  5'- gGUGGugG-CggagaugGGGGUGGUGAUGGGg- -3'
miRNA:   3'- -UACCugCuGa------CCCUACUACUGCUCga -5'
32782 3' -54.4 NC_007346.1 + 187996 0.67 0.987303
Target:  5'- -gGGGCGACgGcGGAUGAggcGACG-GCg -3'
miRNA:   3'- uaCCUGCUGaC-CCUACUa--CUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 251070 0.67 0.985759
Target:  5'- -aGGAgGGCcauuuaGGGAacUGGUGGCGAGUUg -3'
miRNA:   3'- uaCCUgCUGa-----CCCU--ACUACUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 198606 0.67 0.985759
Target:  5'- gAUGGugGuGgUGGaGAUGGUGGCGGGg- -3'
miRNA:   3'- -UACCugC-UgACC-CUACUACUGCUCga -5'
32782 3' -54.4 NC_007346.1 + 176507 0.68 0.984074
Target:  5'- uUGGuCGAUUGGGAuUGGUugaGGCGGGUa -3'
miRNA:   3'- uACCuGCUGACCCU-ACUA---CUGCUCGa -5'
32782 3' -54.4 NC_007346.1 + 181945 0.68 0.982243
Target:  5'- -gGGGUGGCgGGGGUGGUGAUGguGGCg -3'
miRNA:   3'- uaCCUGCUGaCCCUACUACUGC--UCGa -5'
32782 3' -54.4 NC_007346.1 + 306004 0.68 0.982243
Target:  5'- gAUGGugGGggugGGGAUGGUGGCGGa-- -3'
miRNA:   3'- -UACCugCUga--CCCUACUACUGCUcga -5'
32782 3' -54.4 NC_007346.1 + 305173 0.68 0.982243
Target:  5'- aGUGGACGuuaaaUGGGGaucUGAUGAuUGGGCa -3'
miRNA:   3'- -UACCUGCug---ACCCU---ACUACU-GCUCGa -5'
32782 3' -54.4 NC_007346.1 + 61215 0.68 0.980258
Target:  5'- -cGGugGGCUGGGcggaaAUGGUGAUGgaGGUg -3'
miRNA:   3'- uaCCugCUGACCC-----UACUACUGC--UCGa -5'
32782 3' -54.4 NC_007346.1 + 243506 0.68 0.980258
Target:  5'- uUGGuagauaACGGucGGGAUGGUGAUGGGCa -3'
miRNA:   3'- uACC------UGCUgaCCCUACUACUGCUCGa -5'
32782 3' -54.4 NC_007346.1 + 197740 0.68 0.980258
Target:  5'- gGUGGugGAggcgaUGGuGGUGGUGGCGAugGCg -3'
miRNA:   3'- -UACCugCUg----ACC-CUACUACUGCU--CGa -5'
32782 3' -54.4 NC_007346.1 + 198756 0.68 0.980258
Target:  5'- gGUGGugGuGgUGGaGAUGGUGGCGGGg- -3'
miRNA:   3'- -UACCugC-UgACC-CUACUACUGCUCga -5'
32782 3' -54.4 NC_007346.1 + 310454 0.68 0.975798
Target:  5'- -cGGAUGGugGGGGUGGUGACGgugaGGCa -3'
miRNA:   3'- uaCCUGCUgaCCCUACUACUGC----UCGa -5'
32782 3' -54.4 NC_007346.1 + 307176 0.68 0.974327
Target:  5'- gGUGGACuuggcggcggcgacgGGCUGGGG-GgcGGCGGGCUc -3'
miRNA:   3'- -UACCUG---------------CUGACCCUaCuaCUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 253849 0.68 0.973568
Target:  5'- cUGGAUGAUggaggcaggcauuuaGGGAacUGGUGGCGAGUUg -3'
miRNA:   3'- uACCUGCUGa--------------CCCU--ACUACUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 254960 0.68 0.973568
Target:  5'- cUGGAUGAUggaggcaggcauuuaGGGAacUGGUGGCGAGUUg -3'
miRNA:   3'- uACCUGCUGa--------------CCCU--ACUACUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 247254 0.69 0.967494
Target:  5'- -cGGACGcGCUggugugccauuuaGGGAacUGGUGACGAGUa -3'
miRNA:   3'- uaCCUGC-UGA-------------CCCU--ACUACUGCUCGa -5'
32782 3' -54.4 NC_007346.1 + 314068 0.69 0.964745
Target:  5'- --aGAUGAUUGGGGUGAUGugGAc-- -3'
miRNA:   3'- uacCUGCUGACCCUACUACugCUcga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.