Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 176507 | 0.68 | 0.984074 |
Target: 5'- uUGGuCGAUUGGGAuUGGUugaGGCGGGUa -3' miRNA: 3'- uACCuGCUGACCCU-ACUA---CUGCUCGa -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 198666 | 0.66 | 0.994044 |
Target: 5'- gAUGGugG-CgggGGuGAUGGUGGCGGGg- -3' miRNA: 3'- -UACCugCuGa--CC-CUACUACUGCUCga -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 57496 | 0.7 | 0.942211 |
Target: 5'- -cGGugGAgaGGGA-GGUGGCGAGg- -3' miRNA: 3'- uaCCugCUgaCCCUaCUACUGCUCga -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 181945 | 0.68 | 0.982243 |
Target: 5'- -gGGGUGGCgGGGGUGGUGAUGguGGCg -3' miRNA: 3'- uaCCUGCUGaCCCUACUACUGC--UCGa -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 308132 | 0.66 | 0.993185 |
Target: 5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3' miRNA: 3'- -UACCugCUgaCC-CUACUACUGCuCGa -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 307871 | 0.66 | 0.993185 |
Target: 5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3' miRNA: 3'- -UACCugCUgaCC-CUACUACUGCuCGa -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 128643 | 0.66 | 0.993962 |
Target: 5'- gGUGGugGAUuuggugaUGGuGGUGAUGGCG-GUg -3' miRNA: 3'- -UACCugCUG-------ACC-CUACUACUGCuCGa -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 342995 | 0.72 | 0.900111 |
Target: 5'- -cGGACGAuCUGGGAggGGUGAUGAuGUUc -3' miRNA: 3'- uaCCUGCU-GACCCUa-CUACUGCU-CGA- -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 310506 | 0.71 | 0.922909 |
Target: 5'- gAUGGugGGggugGGGAUGGUGA-GAGCg -3' miRNA: 3'- -UACCugCUga--CCCUACUACUgCUCGa -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 309741 | 0.7 | 0.94395 |
Target: 5'- gGUGGACuugguggcggcgacgGGCUGGGA-GgcGGCGGGCUc -3' miRNA: 3'- -UACCUG---------------CUGACCCUaCuaCUGCUCGA- -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 187996 | 0.67 | 0.987303 |
Target: 5'- -gGGGCGACgGcGGAUGAggcGACG-GCg -3' miRNA: 3'- uaCCUGCUGaC-CCUACUa--CUGCuCGa -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 189352 | 0.67 | 0.988715 |
Target: 5'- gGUGGugG-CggagaugGGGGUGGUGAUGGGg- -3' miRNA: 3'- -UACCugCuGa------CCCUACUACUGCUCga -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 308935 | 0.66 | 0.99223 |
Target: 5'- -gGGGCGAgggGGGGUGGgggcgGugGAGUa -3' miRNA: 3'- uaCCUGCUga-CCCUACUa----CugCUCGa -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 188884 | 0.66 | 0.99223 |
Target: 5'- gAUGGugGuGgUGGuGAUGGUGGCGguGGCg -3' miRNA: 3'- -UACCugC-UgACC-CUACUACUGC--UCGa -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 307815 | 0.7 | 0.95056 |
Target: 5'- -cGGugGAUUGGG-UGGagGugGAGCa -3' miRNA: 3'- uaCCugCUGACCCuACUa-CugCUCGa -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 308349 | 0.7 | 0.95056 |
Target: 5'- -cGGugGAUUGGG-UGGagGugGAGCa -3' miRNA: 3'- uaCCugCUGACCCuACUa-CugCUCGa -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 308621 | 0.7 | 0.95056 |
Target: 5'- -cGGugGAUUGGG-UGGagGugGAGCa -3' miRNA: 3'- uaCCugCUGACCCuACUa-CugCUCGa -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 188037 | 0.7 | 0.95056 |
Target: 5'- cGUGGGCGGCggugGGGAgggcggcggcGGUGACGGGg- -3' miRNA: 3'- -UACCUGCUGa---CCCUa---------CUACUGCUCga -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 310306 | 0.7 | 0.95056 |
Target: 5'- -gGGA-GACggugGGGGUGGUGACG-GCg -3' miRNA: 3'- uaCCUgCUGa---CCCUACUACUGCuCGa -5' |
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32782 | 3' | -54.4 | NC_007346.1 | + | 306144 | 0.7 | 0.946493 |
Target: 5'- -gGGGCGGCgGGGAUGggGA-GAGUg -3' miRNA: 3'- uaCCUGCUGaCCCUACuaCUgCUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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