miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32782 3' -54.4 NC_007346.1 + 58793 0.71 0.922909
Target:  5'- cUGGugGAg-GGGAUGGUGGCGgauauGGCg -3'
miRNA:   3'- uACCugCUgaCCCUACUACUGC-----UCGa -5'
32782 3' -54.4 NC_007346.1 + 49990 0.67 0.990002
Target:  5'- gGUGGugGcgaUGGuGGUGGUGGCGAugGCg -3'
miRNA:   3'- -UACCugCug-ACC-CUACUACUGCU--CGa -5'
32782 3' -54.4 NC_007346.1 + 198666 0.66 0.994044
Target:  5'- gAUGGugG-CgggGGuGAUGGUGGCGGGg- -3'
miRNA:   3'- -UACCugCuGa--CC-CUACUACUGCUCga -5'
32782 3' -54.4 NC_007346.1 + 198305 0.66 0.994044
Target:  5'- -gGGGCGAUgguggugGGGGUGAUGGUG-GCg -3'
miRNA:   3'- uaCCUGCUGa------CCCUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 253849 0.68 0.973568
Target:  5'- cUGGAUGAUggaggcaggcauuuaGGGAacUGGUGGCGAGUUg -3'
miRNA:   3'- uACCUGCUGa--------------CCCU--ACUACUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 254960 0.68 0.973568
Target:  5'- cUGGAUGAUggaggcaggcauuuaGGGAacUGGUGGCGAGUUg -3'
miRNA:   3'- uACCUGCUGa--------------CCCU--ACUACUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 197740 0.68 0.980258
Target:  5'- gGUGGugGAggcgaUGGuGGUGGUGGCGAugGCg -3'
miRNA:   3'- -UACCugCUg----ACC-CUACUACUGCU--CGa -5'
32782 3' -54.4 NC_007346.1 + 198756 0.68 0.980258
Target:  5'- gGUGGugGuGgUGGaGAUGGUGGCGGGg- -3'
miRNA:   3'- -UACCugC-UgACC-CUACUACUGCUCga -5'
32782 3' -54.4 NC_007346.1 + 251070 0.67 0.985759
Target:  5'- -aGGAgGGCcauuuaGGGAacUGGUGGCGAGUUg -3'
miRNA:   3'- uaCCUgCUGa-----CCCU--ACUACUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 57431 0.67 0.990002
Target:  5'- uUGGGCGGCgGGGGaaAUGGCG-GCg -3'
miRNA:   3'- uACCUGCUGaCCCUacUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 175927 0.67 0.988715
Target:  5'- uUGGAUGaAUUGGGAUGAUGAUa---- -3'
miRNA:   3'- uACCUGC-UGACCCUACUACUGcucga -5'
32782 3' -54.4 NC_007346.1 + 176507 0.68 0.984074
Target:  5'- uUGGuCGAUUGGGAuUGGUugaGGCGGGUa -3'
miRNA:   3'- uACCuGCUGACCCU-ACUA---CUGCUCGa -5'
32782 3' -54.4 NC_007346.1 + 57496 0.7 0.942211
Target:  5'- -cGGugGAgaGGGA-GGUGGCGAGg- -3'
miRNA:   3'- uaCCugCUgaCCCUaCUACUGCUCga -5'
32782 3' -54.4 NC_007346.1 + 266910 0.67 0.988715
Target:  5'- uUGGGUGACcauuuaGGGAacUGGUGGCGAGUUg -3'
miRNA:   3'- uACCUGCUGa-----CCCU--ACUACUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 198532 0.7 0.954416
Target:  5'- gAUGGugGug-GGGGUGAUGGCG-GUg -3'
miRNA:   3'- -UACCugCugaCCCUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 305173 0.68 0.982243
Target:  5'- aGUGGACGuuaaaUGGGGaucUGAUGAuUGGGCa -3'
miRNA:   3'- -UACCUGCug---ACCCU---ACUACU-GCUCGa -5'
32782 3' -54.4 NC_007346.1 + 35743 0.67 0.990002
Target:  5'- -gGGuaguaACGGCUGGGGUGGUGGaaucagGAGUa -3'
miRNA:   3'- uaCC-----UGCUGACCCUACUACUg-----CUCGa -5'
32782 3' -54.4 NC_007346.1 + 86937 0.66 0.994044
Target:  5'- ---aGCGACUGGGA--GUGGCGcAGCg -3'
miRNA:   3'- uaccUGCUGACCCUacUACUGC-UCGa -5'
32782 3' -54.4 NC_007346.1 + 314068 0.69 0.964745
Target:  5'- --aGAUGAUUGGGGUGAUGugGAc-- -3'
miRNA:   3'- uacCUGCUGACCCUACUACugCUcga -5'
32782 3' -54.4 NC_007346.1 + 61215 0.68 0.980258
Target:  5'- -cGGugGGCUGGGcggaaAUGGUGAUGgaGGUg -3'
miRNA:   3'- uaCCugCUGACCC-----UACUACUGC--UCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.