miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32782 3' -54.4 NC_007346.1 + 128307 0.69 0.964745
Target:  5'- gGUGGugGACUuGG-UGGUGGCGAugGCg -3'
miRNA:   3'- -UACCugCUGAcCCuACUACUGCU--CGa -5'
32782 3' -54.4 NC_007346.1 + 189352 0.67 0.988715
Target:  5'- gGUGGugG-CggagaugGGGGUGGUGAUGGGg- -3'
miRNA:   3'- -UACCugCuGa------CCCUACUACUGCUCga -5'
32782 3' -54.4 NC_007346.1 + 187996 0.67 0.987303
Target:  5'- -gGGGCGACgGcGGAUGAggcGACG-GCg -3'
miRNA:   3'- uaCCUGCUGaC-CCUACUa--CUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 181945 0.68 0.982243
Target:  5'- -gGGGUGGCgGGGGUGGUGAUGguGGCg -3'
miRNA:   3'- uaCCUGCUGaCCCUACUACUGC--UCGa -5'
32782 3' -54.4 NC_007346.1 + 306004 0.68 0.982243
Target:  5'- gAUGGugGGggugGGGAUGGUGGCGGa-- -3'
miRNA:   3'- -UACCugCUga--CCCUACUACUGCUcga -5'
32782 3' -54.4 NC_007346.1 + 243506 0.68 0.980258
Target:  5'- uUGGuagauaACGGucGGGAUGGUGAUGGGCa -3'
miRNA:   3'- uACC------UGCUgaCCCUACUACUGCUCGa -5'
32782 3' -54.4 NC_007346.1 + 310454 0.68 0.975798
Target:  5'- -cGGAUGGugGGGGUGGUGACGgugaGGCa -3'
miRNA:   3'- uaCCUGCUgaCCCUACUACUGC----UCGa -5'
32782 3' -54.4 NC_007346.1 + 307176 0.68 0.974327
Target:  5'- gGUGGACuuggcggcggcgacgGGCUGGGG-GgcGGCGGGCUc -3'
miRNA:   3'- -UACCUG---------------CUGACCCUaCuaCUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 247254 0.69 0.967494
Target:  5'- -cGGACGcGCUggugugccauuuaGGGAacUGGUGACGAGUa -3'
miRNA:   3'- uaCCUGC-UGA-------------CCCU--ACUACUGCUCGa -5'
32782 3' -54.4 NC_007346.1 + 308935 0.66 0.99223
Target:  5'- -gGGGCGAgggGGGGUGGgggcgGugGAGUa -3'
miRNA:   3'- uaCCUGCUga-CCCUACUa----CugCUCGa -5'
32782 3' -54.4 NC_007346.1 + 188884 0.66 0.99223
Target:  5'- gAUGGugGuGgUGGuGAUGGUGGCGguGGCg -3'
miRNA:   3'- -UACCugC-UgACC-CUACUACUGC--UCGa -5'
32782 3' -54.4 NC_007346.1 + 309930 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 184761 0.66 0.994813
Target:  5'- gGUGGugGugaugGGGGUGGUGGgGAGg- -3'
miRNA:   3'- -UACCugCuga--CCCUACUACUgCUCga -5'
32782 3' -54.4 NC_007346.1 + 128643 0.66 0.993962
Target:  5'- gGUGGugGAUuuggugaUGGuGGUGAUGGCG-GUg -3'
miRNA:   3'- -UACCugCUG-------ACC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 128598 0.66 0.993185
Target:  5'- gGUGGugGAggcGGuGGUGGUGACG-GCg -3'
miRNA:   3'- -UACCugCUga-CC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 307598 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 307871 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 308132 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 308405 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 308671 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.