miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32782 3' -54.4 NC_007346.1 + 238949 1.06 0.01487
Target:  5'- aAUGGACGACUGGGAUGAUGACGAGCUg -3'
miRNA:   3'- -UACCUGCUGACCCUACUACUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 308078 0.73 0.836762
Target:  5'- gGUGGugGAUUGGG-UGGagGugGAGCa -3'
miRNA:   3'- -UACCugCUGACCCuACUa-CugCUCGa -5'
32782 3' -54.4 NC_007346.1 + 305826 0.73 0.836762
Target:  5'- -gGGGCGGCgGGGAUGggGA-GAGCg -3'
miRNA:   3'- uaCCUGCUGaCCCUACuaCUgCUCGa -5'
32782 3' -54.4 NC_007346.1 + 181889 0.72 0.866863
Target:  5'- gAUGGugG-CgGGGGUGAUGGCGguGGCg -3'
miRNA:   3'- -UACCugCuGaCCCUACUACUGC--UCGa -5'
32782 3' -54.4 NC_007346.1 + 342995 0.72 0.900111
Target:  5'- -cGGACGAuCUGGGAggGGUGAUGAuGUUc -3'
miRNA:   3'- uaCCUGCU-GACCCUa-CUACUGCU-CGA- -5'
32782 3' -54.4 NC_007346.1 + 58793 0.71 0.922909
Target:  5'- cUGGugGAg-GGGAUGGUGGCGgauauGGCg -3'
miRNA:   3'- uACCugCUgaCCCUACUACUGC-----UCGa -5'
32782 3' -54.4 NC_007346.1 + 310506 0.71 0.922909
Target:  5'- gAUGGugGGggugGGGAUGGUGA-GAGCg -3'
miRNA:   3'- -UACCugCUga--CCCUACUACUgCUCGa -5'
32782 3' -54.4 NC_007346.1 + 57496 0.7 0.942211
Target:  5'- -cGGugGAgaGGGA-GGUGGCGAGg- -3'
miRNA:   3'- uaCCugCUgaCCCUaCUACUGCUCga -5'
32782 3' -54.4 NC_007346.1 + 309741 0.7 0.94395
Target:  5'- gGUGGACuugguggcggcgacgGGCUGGGA-GgcGGCGGGCUc -3'
miRNA:   3'- -UACCUG---------------CUGACCCUaCuaCUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 306144 0.7 0.946493
Target:  5'- -gGGGCGGCgGGGAUGggGA-GAGUg -3'
miRNA:   3'- uaCCUGCUGaCCCUACuaCUgCUCGa -5'
32782 3' -54.4 NC_007346.1 + 307815 0.7 0.95056
Target:  5'- -cGGugGAUUGGG-UGGagGugGAGCa -3'
miRNA:   3'- uaCCugCUGACCCuACUa-CugCUCGa -5'
32782 3' -54.4 NC_007346.1 + 310306 0.7 0.95056
Target:  5'- -gGGA-GACggugGGGGUGGUGACG-GCg -3'
miRNA:   3'- uaCCUgCUGa---CCCUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 188037 0.7 0.95056
Target:  5'- cGUGGGCGGCggugGGGAgggcggcggcGGUGACGGGg- -3'
miRNA:   3'- -UACCUGCUGa---CCCUa---------CUACUGCUCga -5'
32782 3' -54.4 NC_007346.1 + 308621 0.7 0.95056
Target:  5'- -cGGugGAUUGGG-UGGagGugGAGCa -3'
miRNA:   3'- uaCCugCUGACCCuACUa-CugCUCGa -5'
32782 3' -54.4 NC_007346.1 + 308349 0.7 0.95056
Target:  5'- -cGGugGAUUGGG-UGGagGugGAGCa -3'
miRNA:   3'- uaCCugCUGACCCuACUa-CugCUCGa -5'
32782 3' -54.4 NC_007346.1 + 198532 0.7 0.954416
Target:  5'- gAUGGugGug-GGGGUGAUGGCG-GUg -3'
miRNA:   3'- -UACCugCugaCCCUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 314068 0.69 0.964745
Target:  5'- --aGAUGAUUGGGGUGAUGugGAc-- -3'
miRNA:   3'- uacCUGCUGACCCUACUACugCUcga -5'
32782 3' -54.4 NC_007346.1 + 128307 0.69 0.964745
Target:  5'- gGUGGugGACUuGG-UGGUGGCGAugGCg -3'
miRNA:   3'- -UACCugCUGAcCCuACUACUGCU--CGa -5'
32782 3' -54.4 NC_007346.1 + 247254 0.69 0.967494
Target:  5'- -cGGACGcGCUggugugccauuuaGGGAacUGGUGACGAGUa -3'
miRNA:   3'- uaCCUGC-UGA-------------CCCU--ACUACUGCUCGa -5'
32782 3' -54.4 NC_007346.1 + 253849 0.68 0.973568
Target:  5'- cUGGAUGAUggaggcaggcauuuaGGGAacUGGUGGCGAGUUg -3'
miRNA:   3'- uACCUGCUGa--------------CCCU--ACUACUGCUCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.