Results 1 - 20 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 35743 | 0.67 | 0.990002 |
Target: 5'- -gGGuaguaACGGCUGGGGUGGUGGaaucagGAGUa -3' miRNA: 3'- uaCC-----UGCUGACCCUACUACUg-----CUCGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 49990 | 0.67 | 0.990002 |
Target: 5'- gGUGGugGcgaUGGuGGUGGUGGCGAugGCg -3' miRNA: 3'- -UACCugCug-ACC-CUACUACUGCU--CGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 57431 | 0.67 | 0.990002 |
Target: 5'- uUGGGCGGCgGGGGaaAUGGCG-GCg -3' miRNA: 3'- uACCUGCUGaCCCUacUACUGCuCGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 57496 | 0.7 | 0.942211 |
Target: 5'- -cGGugGAgaGGGA-GGUGGCGAGg- -3' miRNA: 3'- uaCCugCUgaCCCUaCUACUGCUCga -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 58793 | 0.71 | 0.922909 |
Target: 5'- cUGGugGAg-GGGAUGGUGGCGgauauGGCg -3' miRNA: 3'- uACCugCUgaCCCUACUACUGC-----UCGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 61215 | 0.68 | 0.980258 |
Target: 5'- -cGGugGGCUGGGcggaaAUGGUGAUGgaGGUg -3' miRNA: 3'- uaCCugCUGACCC-----UACUACUGC--UCGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 86937 | 0.66 | 0.994044 |
Target: 5'- ---aGCGACUGGGA--GUGGCGcAGCg -3' miRNA: 3'- uaccUGCUGACCCUacUACUGC-UCGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 128307 | 0.69 | 0.964745 |
Target: 5'- gGUGGugGACUuGG-UGGUGGCGAugGCg -3' miRNA: 3'- -UACCugCUGAcCCuACUACUGCU--CGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 128598 | 0.66 | 0.993185 |
Target: 5'- gGUGGugGAggcGGuGGUGGUGACG-GCg -3' miRNA: 3'- -UACCugCUga-CC-CUACUACUGCuCGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 128643 | 0.66 | 0.993962 |
Target: 5'- gGUGGugGAUuuggugaUGGuGGUGAUGGCG-GUg -3' miRNA: 3'- -UACCugCUG-------ACC-CUACUACUGCuCGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 175927 | 0.67 | 0.988715 |
Target: 5'- uUGGAUGaAUUGGGAUGAUGAUa---- -3' miRNA: 3'- uACCUGC-UGACCCUACUACUGcucga -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 176507 | 0.68 | 0.984074 |
Target: 5'- uUGGuCGAUUGGGAuUGGUugaGGCGGGUa -3' miRNA: 3'- uACCuGCUGACCCU-ACUA---CUGCUCGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 181889 | 0.72 | 0.866863 |
Target: 5'- gAUGGugG-CgGGGGUGAUGGCGguGGCg -3' miRNA: 3'- -UACCugCuGaCCCUACUACUGC--UCGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 181945 | 0.68 | 0.982243 |
Target: 5'- -gGGGUGGCgGGGGUGGUGAUGguGGCg -3' miRNA: 3'- uaCCUGCUGaCCCUACUACUGC--UCGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 184761 | 0.66 | 0.994813 |
Target: 5'- gGUGGugGugaugGGGGUGGUGGgGAGg- -3' miRNA: 3'- -UACCugCuga--CCCUACUACUgCUCga -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 187996 | 0.67 | 0.987303 |
Target: 5'- -gGGGCGACgGcGGAUGAggcGACG-GCg -3' miRNA: 3'- uaCCUGCUGaC-CCUACUa--CUGCuCGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 188037 | 0.7 | 0.95056 |
Target: 5'- cGUGGGCGGCggugGGGAgggcggcggcGGUGACGGGg- -3' miRNA: 3'- -UACCUGCUGa---CCCUa---------CUACUGCUCga -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 188884 | 0.66 | 0.99223 |
Target: 5'- gAUGGugGuGgUGGuGAUGGUGGCGguGGCg -3' miRNA: 3'- -UACCugC-UgACC-CUACUACUGC--UCGa -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 189352 | 0.67 | 0.988715 |
Target: 5'- gGUGGugG-CggagaugGGGGUGGUGAUGGGg- -3' miRNA: 3'- -UACCugCuGa------CCCUACUACUGCUCga -5' |
|||||||
32782 | 3' | -54.4 | NC_007346.1 | + | 189543 | 0.66 | 0.9955 |
Target: 5'- -aGGGCGGCgGuGGA-GAUGGCG-GCg -3' miRNA: 3'- uaCCUGCUGaC-CCUaCUACUGCuCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home