miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32782 3' -54.4 NC_007346.1 + 342995 0.72 0.900111
Target:  5'- -cGGACGAuCUGGGAggGGUGAUGAuGUUc -3'
miRNA:   3'- uaCCUGCU-GACCCUa-CUACUGCU-CGA- -5'
32782 3' -54.4 NC_007346.1 + 314068 0.69 0.964745
Target:  5'- --aGAUGAUUGGGGUGAUGugGAc-- -3'
miRNA:   3'- uacCUGCUGACCCUACUACugCUcga -5'
32782 3' -54.4 NC_007346.1 + 310506 0.71 0.922909
Target:  5'- gAUGGugGGggugGGGAUGGUGA-GAGCg -3'
miRNA:   3'- -UACCugCUga--CCCUACUACUgCUCGa -5'
32782 3' -54.4 NC_007346.1 + 310454 0.68 0.975798
Target:  5'- -cGGAUGGugGGGGUGGUGACGgugaGGCa -3'
miRNA:   3'- uaCCUGCUgaCCCUACUACUGC----UCGa -5'
32782 3' -54.4 NC_007346.1 + 310306 0.7 0.95056
Target:  5'- -gGGA-GACggugGGGGUGGUGACG-GCg -3'
miRNA:   3'- uaCCUgCUGa---CCCUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 309930 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 309741 0.7 0.94395
Target:  5'- gGUGGACuugguggcggcgacgGGCUGGGA-GgcGGCGGGCUc -3'
miRNA:   3'- -UACCUG---------------CUGACCCUaCuaCUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 308935 0.66 0.99223
Target:  5'- -gGGGCGAgggGGGGUGGgggcgGugGAGUa -3'
miRNA:   3'- uaCCUGCUga-CCCUACUa----CugCUCGa -5'
32782 3' -54.4 NC_007346.1 + 308671 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 308621 0.7 0.95056
Target:  5'- -cGGugGAUUGGG-UGGagGugGAGCa -3'
miRNA:   3'- uaCCugCUGACCCuACUa-CugCUCGa -5'
32782 3' -54.4 NC_007346.1 + 308405 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 308349 0.7 0.95056
Target:  5'- -cGGugGAUUGGG-UGGagGugGAGCa -3'
miRNA:   3'- uaCCugCUGACCCuACUa-CugCUCGa -5'
32782 3' -54.4 NC_007346.1 + 308132 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 308078 0.73 0.836762
Target:  5'- gGUGGugGAUUGGG-UGGagGugGAGCa -3'
miRNA:   3'- -UACCugCUGACCCuACUa-CugCUCGa -5'
32782 3' -54.4 NC_007346.1 + 307871 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 307815 0.7 0.95056
Target:  5'- -cGGugGAUUGGG-UGGagGugGAGCa -3'
miRNA:   3'- uaCCugCUGACCCuACUa-CugCUCGa -5'
32782 3' -54.4 NC_007346.1 + 307598 0.66 0.993185
Target:  5'- gGUGGugGA--GGaGAUGGUGGCG-GCg -3'
miRNA:   3'- -UACCugCUgaCC-CUACUACUGCuCGa -5'
32782 3' -54.4 NC_007346.1 + 307176 0.68 0.974327
Target:  5'- gGUGGACuuggcggcggcgacgGGCUGGGG-GgcGGCGGGCUc -3'
miRNA:   3'- -UACCUG---------------CUGACCCUaCuaCUGCUCGA- -5'
32782 3' -54.4 NC_007346.1 + 306144 0.7 0.946493
Target:  5'- -gGGGCGGCgGGGAUGggGA-GAGUg -3'
miRNA:   3'- uaCCUGCUGaCCCUACuaCUgCUCGa -5'
32782 3' -54.4 NC_007346.1 + 306004 0.68 0.982243
Target:  5'- gAUGGugGGggugGGGAUGGUGGCGGa-- -3'
miRNA:   3'- -UACCugCUga--CCCUACUACUGCUcga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.