miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32784 5' -54 NC_007346.1 + 197669 0.68 0.984129
Target:  5'- -gUGGUGGAGAUGGCGGUgGagGCg-- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 197861 0.68 0.984129
Target:  5'- -gUGGCGgugGAGAUGGUGGCgGUGg--- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 188805 0.68 0.984129
Target:  5'- -gUGGCGAugguGGUGGUGGCgAUGgUgGg -3'
miRNA:   3'- gaACCGUUu---CUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 189434 0.68 0.982294
Target:  5'- --cGGCGAcGGUGGUGGCgGUGacggCGg -3'
miRNA:   3'- gaaCCGUUuCUACCGCCGgUACga--GC- -5'
32784 5' -54 NC_007346.1 + 311631 0.68 0.982294
Target:  5'- -aUGGCGaugGAGAUGGCGGCgGUaaugGCg-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUA----CGagc -5'
32784 5' -54 NC_007346.1 + 239545 0.68 0.981119
Target:  5'- --cGGCGGugauGGUGGUcucaucaaacucgguGGCCAggUGCUCGg -3'
miRNA:   3'- gaaCCGUUu---CUACCG---------------CCGGU--ACGAGC- -5'
32784 5' -54 NC_007346.1 + 189348 0.68 0.980304
Target:  5'- -gUGGCGGAGAUGGgGGUgGUGa--- -3'
miRNA:   3'- gaACCGUUUCUACCgCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 189252 0.68 0.980304
Target:  5'- -gUGGUGGAGAUGGUGGUgGUGgUg- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 223253 0.68 0.980304
Target:  5'- -aUGGUAAAaAUGGCGGUUAUGUUg- -3'
miRNA:   3'- gaACCGUUUcUACCGCCGGUACGAgc -5'
32784 5' -54 NC_007346.1 + 59286 0.68 0.980304
Target:  5'- uUUGGCGgcGGUGGUGGCgGUGgUa- -3'
miRNA:   3'- gAACCGUuuCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 307762 0.68 0.978152
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGaGCaggCGg -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUaCGa--GC- -5'
32784 5' -54 NC_007346.1 + 57468 0.68 0.978152
Target:  5'- -gUGGCGGAGAUGGUGGagguUGCa-- -3'
miRNA:   3'- gaACCGUUUCUACCGCCggu-ACGagc -5'
32784 5' -54 NC_007346.1 + 308568 0.68 0.978152
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGaGCaggCGg -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUaCGa--GC- -5'
32784 5' -54 NC_007346.1 + 308296 0.68 0.978152
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGaGCaggCGg -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUaCGa--GC- -5'
32784 5' -54 NC_007346.1 + 184742 0.69 0.975831
Target:  5'- -gUGGgGAGGGUGGCGGUgGUGgUg- -3'
miRNA:   3'- gaACCgUUUCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 200886 0.69 0.975831
Target:  5'- -gUGGCAAcGGUGGCGGUgAUGgUg- -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 188904 0.69 0.975831
Target:  5'- -gUGGCGGugauGGUGGCGGCgAUGgUgGu -3'
miRNA:   3'- gaACCGUUu---CUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 184775 0.69 0.975831
Target:  5'- -gUGGgGAGGGUGGCGGUgGUGgUg- -3'
miRNA:   3'- gaACCgUUUCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 197915 0.69 0.975831
Target:  5'- -gUGGCGgugGAGAUGGCGGUgGUGg--- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 198329 0.69 0.975831
Target:  5'- -gUGGCGgugGAGAUGGCGGUgGUGg--- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUACgagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.