miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32784 5' -54 NC_007346.1 + 178696 0.67 0.99324
Target:  5'- -gUGGCGAuGGUGGUGGUgAUGgUgGa -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 310217 0.67 0.992871
Target:  5'- -aUGGCGGuggaggagauugcGAUGGUGGC-AUGCUUGa -3'
miRNA:   3'- gaACCGUUu------------CUACCGCCGgUACGAGC- -5'
32784 5' -54 NC_007346.1 + 266607 0.67 0.992287
Target:  5'- --aGGCAGu-GUGGCGGCUcgGCa-- -3'
miRNA:   3'- gaaCCGUUucUACCGCCGGuaCGagc -5'
32784 5' -54 NC_007346.1 + 181912 0.67 0.992287
Target:  5'- -aUGGCGGGGGUGGCGGggGUGgUg- -3'
miRNA:   3'- gaACCGUUUCUACCGCCggUACgAgc -5'
32784 5' -54 NC_007346.1 + 181951 0.67 0.992287
Target:  5'- -aUGGCGGGGGUGGCGGggGUGgUg- -3'
miRNA:   3'- gaACCGUUUCUACCGCCggUACgAgc -5'
32784 5' -54 NC_007346.1 + 266553 0.67 0.992287
Target:  5'- --aGGCAGu-GUGGCGGCUcgGCa-- -3'
miRNA:   3'- gaaCCGUUucUACCGCCGGuaCGagc -5'
32784 5' -54 NC_007346.1 + 49994 0.67 0.99123
Target:  5'- -gUGGCGAugguGGUGGUGGCgAUGgCgaggCGg -3'
miRNA:   3'- gaACCGUUu---CUACCGCCGgUAC-Ga---GC- -5'
32784 5' -54 NC_007346.1 + 308095 0.67 0.99123
Target:  5'- -gUGGUggaGGAGAUGGCGGUgGUGgaUUGg -3'
miRNA:   3'- gaACCG---UUUCUACCGCCGgUACg-AGC- -5'
32784 5' -54 NC_007346.1 + 128183 0.67 0.99123
Target:  5'- -gUGGCGGuGAUGGUGGUgGUGgaCUUGg -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUAC--GAGC- -5'
32784 5' -54 NC_007346.1 + 311757 0.67 0.99123
Target:  5'- -gUGGUGGAGAUGGCGGUg--GCg-- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGguaCGagc -5'
32784 5' -54 NC_007346.1 + 308787 0.67 0.990061
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGggGCa-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 198464 0.67 0.990061
Target:  5'- -gUGGUGGAGAUGGUGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 343908 0.67 0.990061
Target:  5'- uCUUGGU--GGAaucaacuuUGGUcauGCCAUGCUCGg -3'
miRNA:   3'- -GAACCGuuUCU--------ACCGc--CGGUACGAGC- -5'
32784 5' -54 NC_007346.1 + 398613 0.67 0.988774
Target:  5'- --cGGUAAAGAUcGGCGuuCCAUGUUCc -3'
miRNA:   3'- gaaCCGUUUCUA-CCGCc-GGUACGAGc -5'
32784 5' -54 NC_007346.1 + 274460 0.67 0.988774
Target:  5'- gCUUGGCAAgcGGugcauucucaAUGGCGGUCAUGa-CGa -3'
miRNA:   3'- -GAACCGUU--UC----------UACCGCCGGUACgaGC- -5'
32784 5' -54 NC_007346.1 + 189926 0.67 0.988774
Target:  5'- --cGGCGGuGAUGGUGGCgGUGacggCGa -3'
miRNA:   3'- gaaCCGUUuCUACCGCCGgUACga--GC- -5'
32784 5' -54 NC_007346.1 + 349799 0.67 0.987362
Target:  5'- --cGGCGgcGGUGGCGGCgGcgGCggCGg -3'
miRNA:   3'- gaaCCGUuuCUACCGCCGgUa-CGa-GC- -5'
32784 5' -54 NC_007346.1 + 189378 0.67 0.987362
Target:  5'- -gUGGCGGuGAUGGUGGCgGUGgUg- -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 201062 0.67 0.987362
Target:  5'- --cGGUGGAGAUGGUGGCgGUGa--- -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 58163 0.68 0.985816
Target:  5'- -gUGGgGGAGAUGGCGGCg--GCg-- -3'
miRNA:   3'- gaACCgUUUCUACCGCCGguaCGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.