miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32784 5' -54 NC_007346.1 + 197945 0.72 0.911624
Target:  5'- -gUGGCGgugGAGAUGGCGGUgGUGgUgGa -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 162061 0.75 0.758449
Target:  5'- -aUGGCAAuGGGUGGUGGCUuugGUGCaUCGg -3'
miRNA:   3'- gaACCGUU-UCUACCGCCGG---UACG-AGC- -5'
32784 5' -54 NC_007346.1 + 198464 0.67 0.990061
Target:  5'- -gUGGUGGAGAUGGUGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 227562 0.7 0.961477
Target:  5'- aCUUGGUGucAGAaugguUGGCGGCgGUGC-CGg -3'
miRNA:   3'- -GAACCGUu-UCU-----ACCGCCGgUACGaGC- -5'
32784 5' -54 NC_007346.1 + 198434 0.75 0.749216
Target:  5'- -gUGGCGGAGAUGGCGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 398613 0.67 0.988774
Target:  5'- --cGGUAAAGAUcGGCGuuCCAUGUUCc -3'
miRNA:   3'- gaaCCGUUUCUA-CCGCc-GGUACGAGc -5'
32784 5' -54 NC_007346.1 + 197834 0.75 0.749216
Target:  5'- -gUGGCGGAGAUGGCGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 165565 0.8 0.535935
Target:  5'- -gUGGCGAAGGUGGCGGCgAUGg-CGa -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 197915 0.69 0.975831
Target:  5'- -gUGGCGgugGAGAUGGCGGUgGUGg--- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 60336 0.66 0.996156
Target:  5'- -aUGGCGAuGGUGGUGGUgAUGgUgGu -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 198194 0.72 0.899713
Target:  5'- -gUGGCGGAGAUGGUGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 198745 0.75 0.776597
Target:  5'- -gUGGCGGAGAUGGUGGUgGUGgUgGa -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 197861 0.68 0.984129
Target:  5'- -gUGGCGgugGAGAUGGUGGCgGUGg--- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 49994 0.67 0.99123
Target:  5'- -gUGGCGAugguGGUGGUGGCgAUGgCgaggCGg -3'
miRNA:   3'- gaACCGUUu---CUACCGCCGgUAC-Ga---GC- -5'
32784 5' -54 NC_007346.1 + 178669 0.67 0.99324
Target:  5'- -gUGGCGGAGAUGGgGGUaacgGCg-- -3'
miRNA:   3'- gaACCGUUUCUACCgCCGgua-CGagc -5'
32784 5' -54 NC_007346.1 + 178723 0.67 0.99324
Target:  5'- -gUGGCGAuGGUGGUGGUgAUGgUgGa -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 201062 0.67 0.987362
Target:  5'- --cGGUGGAGAUGGUGGCgGUGa--- -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 308464 0.66 0.995548
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGagGCa-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 349799 0.67 0.987362
Target:  5'- --cGGCGgcGGUGGCGGCgGcgGCggCGg -3'
miRNA:   3'- gaaCCGUuuCUACCGCCGgUa-CGa-GC- -5'
32784 5' -54 NC_007346.1 + 189378 0.67 0.987362
Target:  5'- -gUGGCGGuGAUGGUGGCgGUGgUg- -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.