miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32784 5' -54 NC_007346.1 + 162061 0.75 0.758449
Target:  5'- -aUGGCAAuGGGUGGUGGCUuugGUGCaUCGg -3'
miRNA:   3'- gaACCGUU-UCUACCGCCGG---UACG-AGC- -5'
32784 5' -54 NC_007346.1 + 165565 0.8 0.535935
Target:  5'- -gUGGCGAAGGUGGCGGCgAUGg-CGa -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 165592 0.72 0.905777
Target:  5'- -gUGGCGAcgaAGGUGGCGGCgAUGgUgGu -3'
miRNA:   3'- gaACCGUU---UCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 178669 0.67 0.99324
Target:  5'- -gUGGCGGAGAUGGgGGUaacgGCg-- -3'
miRNA:   3'- gaACCGUUUCUACCgCCGgua-CGagc -5'
32784 5' -54 NC_007346.1 + 178696 0.67 0.99324
Target:  5'- -gUGGCGAuGGUGGUGGUgAUGgUgGa -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 178723 0.67 0.99324
Target:  5'- -gUGGCGAuGGUGGUGGUgAUGgUgGa -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 181836 0.66 0.996156
Target:  5'- --cGGCGGuGGUGGUGGCgGUGg-CGg -3'
miRNA:   3'- gaaCCGUUuCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 181912 0.67 0.992287
Target:  5'- -aUGGCGGGGGUGGCGGggGUGgUg- -3'
miRNA:   3'- gaACCGUUUCUACCGCCggUACgAgc -5'
32784 5' -54 NC_007346.1 + 181951 0.67 0.992287
Target:  5'- -aUGGCGGGGGUGGCGGggGUGgUg- -3'
miRNA:   3'- gaACCGUUUCUACCGCCggUACgAgc -5'
32784 5' -54 NC_007346.1 + 184742 0.69 0.975831
Target:  5'- -gUGGgGAGGGUGGCGGUgGUGgUg- -3'
miRNA:   3'- gaACCgUUUCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 184775 0.69 0.975831
Target:  5'- -gUGGgGAGGGUGGCGGUgGUGgUg- -3'
miRNA:   3'- gaACCgUUUCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 188052 0.7 0.958018
Target:  5'- --aGGUGAGGGUGGCGG-CGUGggCGg -3'
miRNA:   3'- gaaCCGUUUCUACCGCCgGUACgaGC- -5'
32784 5' -54 NC_007346.1 + 188805 0.68 0.984129
Target:  5'- -gUGGCGAugguGGUGGUGGCgAUGgUgGg -3'
miRNA:   3'- gaACCGUUu---CUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 188904 0.69 0.975831
Target:  5'- -gUGGCGGugauGGUGGCGGCgAUGgUgGu -3'
miRNA:   3'- gaACCGUUu---CUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 189222 0.69 0.973335
Target:  5'- -gUGGUgauGGAGGUGGCGGCgGUGa-CGg -3'
miRNA:   3'- gaACCG---UUUCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 189252 0.68 0.980304
Target:  5'- -gUGGUGGAGAUGGUGGUgGUGgUg- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 189348 0.68 0.980304
Target:  5'- -gUGGCGGAGAUGGgGGUgGUGa--- -3'
miRNA:   3'- gaACCGUUUCUACCgCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 189378 0.67 0.987362
Target:  5'- -gUGGCGGuGAUGGUGGCgGUGgUg- -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 189434 0.68 0.982294
Target:  5'- --cGGCGAcGGUGGUGGCgGUGacggCGg -3'
miRNA:   3'- gaaCCGUUuCUACCGCCGgUACga--GC- -5'
32784 5' -54 NC_007346.1 + 189536 0.72 0.911624
Target:  5'- --cGGUGGAGAUGGCGGCgGUGauggUGg -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUACga--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.