miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32784 5' -54 NC_007346.1 + 49796 0.7 0.958018
Target:  5'- -cUGGCAuuuucuGAUGuuccgccgccGCGGCCAuUGCUCGu -3'
miRNA:   3'- gaACCGUuu----CUAC----------CGCCGGU-ACGAGC- -5'
32784 5' -54 NC_007346.1 + 49994 0.67 0.99123
Target:  5'- -gUGGCGAugguGGUGGUGGCgAUGgCgaggCGg -3'
miRNA:   3'- gaACCGUUu---CUACCGCCGgUAC-Ga---GC- -5'
32784 5' -54 NC_007346.1 + 57468 0.68 0.978152
Target:  5'- -gUGGCGGAGAUGGUGGagguUGCa-- -3'
miRNA:   3'- gaACCGUUUCUACCGCCggu-ACGagc -5'
32784 5' -54 NC_007346.1 + 57510 0.7 0.961477
Target:  5'- -gUGGCGAGGGaGGCGGCgAUGgaggCGg -3'
miRNA:   3'- gaACCGUUUCUaCCGCCGgUACga--GC- -5'
32784 5' -54 NC_007346.1 + 58163 0.68 0.985816
Target:  5'- -gUGGgGGAGAUGGCGGCg--GCg-- -3'
miRNA:   3'- gaACCgUUUCUACCGCCGguaCGagc -5'
32784 5' -54 NC_007346.1 + 59286 0.68 0.980304
Target:  5'- uUUGGCGgcGGUGGUGGCgGUGgUa- -3'
miRNA:   3'- gAACCGUuuCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 60336 0.66 0.996156
Target:  5'- -aUGGCGAuGGUGGUGGUgAUGgUgGu -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 61191 0.66 0.996487
Target:  5'- --aGGCGGAGGUGGC-GCCGgugauggcgguggGCUgGg -3'
miRNA:   3'- gaaCCGUUUCUACCGcCGGUa------------CGAgC- -5'
32784 5' -54 NC_007346.1 + 63451 0.73 0.858946
Target:  5'- -gUGGCAAGGAUGGUGGCaAUGgUgGu -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 63504 0.71 0.932811
Target:  5'- --aGGCAAGGAUGGUGGCaAUGgUgGu -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 86732 0.66 0.996694
Target:  5'- --cGGCGGAGGguGCGGCCAaUGgUCu -3'
miRNA:   3'- gaaCCGUUUCUacCGCCGGU-ACgAGc -5'
32784 5' -54 NC_007346.1 + 107043 0.66 0.996156
Target:  5'- -aUGGCAGGGAgagauaGGCGGgCuuuUGUUUGa -3'
miRNA:   3'- gaACCGUUUCUa-----CCGCCgGu--ACGAGC- -5'
32784 5' -54 NC_007346.1 + 128041 0.71 0.922659
Target:  5'- aCUUGGCGguggAGGAcuUGGCGGUgGUGgaCUCGg -3'
miRNA:   3'- -GAACCGU----UUCU--ACCGCCGgUAC--GAGC- -5'
32784 5' -54 NC_007346.1 + 128183 0.67 0.99123
Target:  5'- -gUGGCGGuGAUGGUGGUgGUGgaCUUGg -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUAC--GAGC- -5'
32784 5' -54 NC_007346.1 + 128219 0.74 0.835941
Target:  5'- -gUGGCGGAGAUGGCGGCgGagaugGCg-- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUa----CGagc -5'
32784 5' -54 NC_007346.1 + 128347 0.76 0.739888
Target:  5'- --cGGCGGAGAUGGCGGUgGUGg-CGa -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 128546 0.72 0.911624
Target:  5'- -aUGGCGAugcAGAUGGCGGCgGUGg--- -3'
miRNA:   3'- gaACCGUU---UCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 128570 0.72 0.905777
Target:  5'- -gUGGCGGAGAUGGCGGUg--GCg-- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGguaCGagc -5'
32784 5' -54 NC_007346.1 + 128711 0.71 0.927845
Target:  5'- -gUGGCGgcGGUGGCGGCgGUGgUgGu -3'
miRNA:   3'- gaACCGUuuCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 135301 0.66 0.994097
Target:  5'- -gUGGUGAAGugcuuUGGUGGCuCGcGCUCa -3'
miRNA:   3'- gaACCGUUUCu----ACCGCCG-GUaCGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.