miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32784 5' -54 NC_007346.1 + 398613 0.67 0.988774
Target:  5'- --cGGUAAAGAUcGGCGuuCCAUGUUCc -3'
miRNA:   3'- gaaCCGUUUCUA-CCGCc-GGUACGAGc -5'
32784 5' -54 NC_007346.1 + 349799 0.67 0.987362
Target:  5'- --cGGCGgcGGUGGCGGCgGcgGCggCGg -3'
miRNA:   3'- gaaCCGUuuCUACCGCCGgUa-CGa-GC- -5'
32784 5' -54 NC_007346.1 + 343908 0.67 0.990061
Target:  5'- uCUUGGU--GGAaucaacuuUGGUcauGCCAUGCUCGg -3'
miRNA:   3'- -GAACCGuuUCU--------ACCGc--CGGUACGAGC- -5'
32784 5' -54 NC_007346.1 + 314707 0.72 0.893435
Target:  5'- aUUGGUggGGGUGGCGGUgGUGggggCGg -3'
miRNA:   3'- gAACCGuuUCUACCGCCGgUACga--GC- -5'
32784 5' -54 NC_007346.1 + 311757 0.67 0.99123
Target:  5'- -gUGGUGGAGAUGGCGGUg--GCg-- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGguaCGagc -5'
32784 5' -54 NC_007346.1 + 311733 0.69 0.973335
Target:  5'- -aUGGCGGuGGUGGCGGUgGUGg-CGg -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 311673 0.69 0.970657
Target:  5'- -gUGGCGgugGAGAUGGUGGCgGUGgaaUUGg -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUACg--AGC- -5'
32784 5' -54 NC_007346.1 + 311631 0.68 0.982294
Target:  5'- -aUGGCGaugGAGAUGGCGGCgGUaaugGCg-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUA----CGagc -5'
32784 5' -54 NC_007346.1 + 311594 0.7 0.961477
Target:  5'- --aGGCGGAGAUGGCGGUg--GCg-- -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGguaCGagc -5'
32784 5' -54 NC_007346.1 + 311527 0.66 0.994864
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGaGUUgGu -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUaCGAgC- -5'
32784 5' -54 NC_007346.1 + 311488 0.66 0.994864
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGaGUUgGu -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUaCGAgC- -5'
32784 5' -54 NC_007346.1 + 311376 0.67 0.99324
Target:  5'- --cGGCAGAGAaGGCGGCg--GCgaCGg -3'
miRNA:   3'- gaaCCGUUUCUaCCGCCGguaCGa-GC- -5'
32784 5' -54 NC_007346.1 + 310345 0.71 0.932811
Target:  5'- --aGGCGAGGGUGGUGGUgAUgGCggCGg -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUA-CGa-GC- -5'
32784 5' -54 NC_007346.1 + 310217 0.67 0.992871
Target:  5'- -aUGGCGGuggaggagauugcGAUGGUGGC-AUGCUUGa -3'
miRNA:   3'- gaACCGUUu------------CUACCGCCGgUACGAGC- -5'
32784 5' -54 NC_007346.1 + 310115 0.78 0.603819
Target:  5'- -gUGGCGGAGAUGGCGGCgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 310060 0.72 0.911624
Target:  5'- --cGGCGGAGAUGGCGGCgGagaugGCg-- -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUa----CGagc -5'
32784 5' -54 NC_007346.1 + 310016 0.66 0.995548
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGagGCa-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 309971 0.69 0.970657
Target:  5'- -gUGGUGGAGAUGGCGGUgGggGCa-- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 309758 0.73 0.85146
Target:  5'- -gUGGUGGAGAUGGUGGCgGUGgaCUUGg -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUAC--GAGC- -5'
32784 5' -54 NC_007346.1 + 309720 0.69 0.975831
Target:  5'- --gGGCuGGGA-GGCGGCgG-GCUCGg -3'
miRNA:   3'- gaaCCGuUUCUaCCGCCGgUaCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.