miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32784 5' -54 NC_007346.1 + 239691 0.97 0.060175
Target:  5'- cCUUGGCAAAGAUGGC-GCCAUGCUCGg -3'
miRNA:   3'- -GAACCGUUUCUACCGcCGGUACGAGC- -5'
32784 5' -54 NC_007346.1 + 165565 0.8 0.535935
Target:  5'- -gUGGCGAAGGUGGCGGCgAUGg-CGa -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 310115 0.78 0.603819
Target:  5'- -gUGGCGGAGAUGGCGGCgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 306311 0.77 0.662819
Target:  5'- --aGGCGGAGAUGGCGGCgGUGgaaUUGg -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUACg--AGC- -5'
32784 5' -54 NC_007346.1 + 272459 0.77 0.672615
Target:  5'- -gUGGCGGAGGUGGCGGUgGUGg-CGg -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 128347 0.76 0.739888
Target:  5'- --cGGCGGAGAUGGCGGUgGUGg-CGa -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 197834 0.75 0.749216
Target:  5'- -gUGGCGGAGAUGGCGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 198434 0.75 0.749216
Target:  5'- -gUGGCGGAGAUGGCGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 162061 0.75 0.758449
Target:  5'- -aUGGCAAuGGGUGGUGGCUuugGUGCaUCGg -3'
miRNA:   3'- gaACCGUU-UCUACCGCCGG---UACG-AGC- -5'
32784 5' -54 NC_007346.1 + 198745 0.75 0.776597
Target:  5'- -gUGGCGGAGAUGGUGGUgGUGgUgGa -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 128219 0.74 0.835941
Target:  5'- -gUGGCGGAGAUGGCGGCgGagaugGCg-- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUa----CGagc -5'
32784 5' -54 NC_007346.1 + 309758 0.73 0.85146
Target:  5'- -gUGGUGGAGAUGGUGGCgGUGgaCUUGg -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUAC--GAGC- -5'
32784 5' -54 NC_007346.1 + 307193 0.73 0.85146
Target:  5'- -gUGGUGGAGAUGGUGGCgGUGgaCUUGg -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUAC--GAGC- -5'
32784 5' -54 NC_007346.1 + 63451 0.73 0.858946
Target:  5'- -gUGGCAAGGAUGGUGGCaAUGgUgGu -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 314707 0.72 0.893435
Target:  5'- aUUGGUggGGGUGGCGGUgGUGggggCGg -3'
miRNA:   3'- gAACCGuuUCUACCGCCGgUACga--GC- -5'
32784 5' -54 NC_007346.1 + 198823 0.72 0.899095
Target:  5'- -gUGGCGGAGAUGGUGGCgGUugagaugGCggCGg -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUA-------CGa-GC- -5'
32784 5' -54 NC_007346.1 + 198026 0.72 0.899713
Target:  5'- -gUGGCGGAGAUGGUGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 198194 0.72 0.899713
Target:  5'- -gUGGCGGAGAUGGUGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 128570 0.72 0.905777
Target:  5'- -gUGGCGGAGAUGGCGGUg--GCg-- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGguaCGagc -5'
32784 5' -54 NC_007346.1 + 197981 0.72 0.905777
Target:  5'- -gUGGUGGAGAUGGCGGUgGUGgUg- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.