miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32784 5' -54 NC_007346.1 + 165565 0.8 0.535935
Target:  5'- -gUGGCGAAGGUGGCGGCgAUGg-CGa -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 227562 0.7 0.961477
Target:  5'- aCUUGGUGucAGAaugguUGGCGGCgGUGC-CGg -3'
miRNA:   3'- -GAACCGUu-UCU-----ACCGCCGgUACGaGC- -5'
32784 5' -54 NC_007346.1 + 198329 0.69 0.975831
Target:  5'- -gUGGCGgugGAGAUGGCGGUgGUGg--- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 86732 0.66 0.996694
Target:  5'- --cGGCGGAGGguGCGGCCAaUGgUCu -3'
miRNA:   3'- gaaCCGUUUCUacCGCCGGU-ACgAGc -5'
32784 5' -54 NC_007346.1 + 198745 0.75 0.776597
Target:  5'- -gUGGCGGAGAUGGUGGUgGUGgUgGa -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 198823 0.72 0.899095
Target:  5'- -gUGGCGGAGAUGGUGGCgGUugagaugGCggCGg -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUA-------CGa-GC- -5'
32784 5' -54 NC_007346.1 + 198194 0.72 0.899713
Target:  5'- -gUGGCGGAGAUGGUGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 197981 0.72 0.905777
Target:  5'- -gUGGUGGAGAUGGCGGUgGUGgUg- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 198056 0.71 0.927845
Target:  5'- -gUGGUGGAGAUGGUGGCgGUGgUg- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 57510 0.7 0.961477
Target:  5'- -gUGGCGAGGGaGGCGGCgAUGgaggCGg -3'
miRNA:   3'- gaACCGUUUCUaCCGCCGgUACga--GC- -5'
32784 5' -54 NC_007346.1 + 198554 0.71 0.937555
Target:  5'- -gUGGUGGAGAUGGCGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 197945 0.72 0.911624
Target:  5'- -gUGGCGgugGAGAUGGCGGUgGUGgUgGa -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 197834 0.75 0.749216
Target:  5'- -gUGGCGGAGAUGGCGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 197699 0.7 0.954352
Target:  5'- -gUGGUGGAGAUGGUGGCgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 198434 0.75 0.749216
Target:  5'- -gUGGCGGAGAUGGCGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 165592 0.72 0.905777
Target:  5'- -gUGGCGAcgaAGGUGGCGGCgAUGgUgGu -3'
miRNA:   3'- gaACCGUU---UCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 49796 0.7 0.958018
Target:  5'- -cUGGCAuuuucuGAUGuuccgccgccGCGGCCAuUGCUCGu -3'
miRNA:   3'- gaACCGUuu----CUAC----------CGCCGGU-ACGAGC- -5'
32784 5' -54 NC_007346.1 + 197915 0.69 0.975831
Target:  5'- -gUGGCGgugGAGAUGGCGGUgGUGg--- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 162061 0.75 0.758449
Target:  5'- -aUGGCAAuGGGUGGUGGCUuugGUGCaUCGg -3'
miRNA:   3'- gaACCGUU-UCUACCGCCGG---UACG-AGC- -5'
32784 5' -54 NC_007346.1 + 198026 0.72 0.899713
Target:  5'- -gUGGCGGAGAUGGUGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.