miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32784 5' -54 NC_007346.1 + 266607 0.67 0.992287
Target:  5'- --aGGCAGu-GUGGCGGCUcgGCa-- -3'
miRNA:   3'- gaaCCGUUucUACCGCCGGuaCGagc -5'
32784 5' -54 NC_007346.1 + 178696 0.67 0.99324
Target:  5'- -gUGGCGAuGGUGGUGGUgAUGgUgGa -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 178723 0.67 0.99324
Target:  5'- -gUGGCGAuGGUGGUGGUgAUGgUgGa -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 178669 0.67 0.99324
Target:  5'- -gUGGCGGAGAUGGgGGUaacgGCg-- -3'
miRNA:   3'- gaACCGUUUCUACCgCCGgua-CGagc -5'
32784 5' -54 NC_007346.1 + 311376 0.67 0.99324
Target:  5'- --cGGCAGAGAaGGCGGCg--GCgaCGg -3'
miRNA:   3'- gaaCCGUUUCUaCCGCCGguaCGa-GC- -5'
32784 5' -54 NC_007346.1 + 310217 0.67 0.992871
Target:  5'- -aUGGCGGuggaggagauugcGAUGGUGGC-AUGCUUGa -3'
miRNA:   3'- gaACCGUUu------------CUACCGCCGgUACGAGC- -5'
32784 5' -54 NC_007346.1 + 181912 0.67 0.992287
Target:  5'- -aUGGCGGGGGUGGCGGggGUGgUg- -3'
miRNA:   3'- gaACCGUUUCUACCGCCggUACgAgc -5'
32784 5' -54 NC_007346.1 + 181951 0.67 0.992287
Target:  5'- -aUGGCGGGGGUGGCGGggGUGgUg- -3'
miRNA:   3'- gaACCGUUUCUACCGCCggUACgAgc -5'
32784 5' -54 NC_007346.1 + 266553 0.67 0.992287
Target:  5'- --aGGCAGu-GUGGCGGCUcgGCa-- -3'
miRNA:   3'- gaaCCGUUucUACCGCCGGuaCGagc -5'
32784 5' -54 NC_007346.1 + 135301 0.66 0.994097
Target:  5'- -gUGGUGAAGugcuuUGGUGGCuCGcGCUCa -3'
miRNA:   3'- gaACCGUUUCu----ACCGCCG-GUaCGAGc -5'
32784 5' -54 NC_007346.1 + 311527 0.66 0.994864
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGaGUUgGu -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUaCGAgC- -5'
32784 5' -54 NC_007346.1 + 311488 0.66 0.994864
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGaGUUgGu -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUaCGAgC- -5'
32784 5' -54 NC_007346.1 + 107043 0.66 0.996156
Target:  5'- -aUGGCAGGGAgagauaGGCGGgCuuuUGUUUGa -3'
miRNA:   3'- gaACCGUUUCUa-----CCGCCgGu--ACGAGC- -5'
32784 5' -54 NC_007346.1 + 181836 0.66 0.996156
Target:  5'- --cGGCGGuGGUGGUGGCgGUGg-CGg -3'
miRNA:   3'- gaaCCGUUuCUACCGCCGgUACgaGC- -5'
32784 5' -54 NC_007346.1 + 307657 0.66 0.995548
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGagGCa-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 307987 0.66 0.995548
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGagGCa-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 308191 0.66 0.995548
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGagGCa-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 308464 0.66 0.995548
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGagGCa-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 310016 0.66 0.995548
Target:  5'- -aUGGCGgugGAGAUGGCGGUgGagGCa-- -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5'
32784 5' -54 NC_007346.1 + 274533 0.66 0.994864
Target:  5'- --cGGCGAuucGGA-GGCGGCgaAUGCaUCGa -3'
miRNA:   3'- gaaCCGUU---UCUaCCGCCGg-UACG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.