miRNA display CGI


Results 21 - 40 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32784 5' -54 NC_007346.1 + 128570 0.72 0.905777
Target:  5'- -gUGGCGGAGAUGGCGGUg--GCg-- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGguaCGagc -5'
32784 5' -54 NC_007346.1 + 197945 0.72 0.911624
Target:  5'- -gUGGCGgugGAGAUGGCGGUgGUGgUgGa -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 128546 0.72 0.911624
Target:  5'- -aUGGCGAugcAGAUGGCGGCgGUGg--- -3'
miRNA:   3'- gaACCGUU---UCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 310060 0.72 0.911624
Target:  5'- --cGGCGGAGAUGGCGGCgGagaugGCg-- -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUa----CGagc -5'
32784 5' -54 NC_007346.1 + 189536 0.72 0.911624
Target:  5'- --cGGUGGAGAUGGCGGCgGUGauggUGg -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUACga--GC- -5'
32784 5' -54 NC_007346.1 + 307385 0.71 0.922659
Target:  5'- -aUGGCGgugGAGAUGGCGGCgGaGCaggCGg -3'
miRNA:   3'- gaACCGU---UUCUACCGCCGgUaCGa--GC- -5'
32784 5' -54 NC_007346.1 + 128041 0.71 0.922659
Target:  5'- aCUUGGCGguggAGGAcuUGGCGGUgGUGgaCUCGg -3'
miRNA:   3'- -GAACCGU----UUCU--ACCGCCGgUAC--GAGC- -5'
32784 5' -54 NC_007346.1 + 198224 0.71 0.927845
Target:  5'- -gUGGUGGAGAUGGUGGCgGUGgUg- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 198056 0.71 0.927845
Target:  5'- -gUGGUGGAGAUGGUGGCgGUGgUg- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 128711 0.71 0.927845
Target:  5'- -gUGGCGgcGGUGGCGGCgGUGgUgGu -3'
miRNA:   3'- gaACCGUuuCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 310345 0.71 0.932811
Target:  5'- --aGGCGAGGGUGGUGGUgAUgGCggCGg -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUA-CGa-GC- -5'
32784 5' -54 NC_007346.1 + 63504 0.71 0.932811
Target:  5'- --aGGCAAGGAUGGUGGCaAUGgUgGu -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUACgAgC- -5'
32784 5' -54 NC_007346.1 + 198554 0.71 0.937555
Target:  5'- -gUGGUGGAGAUGGCGGUgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 200553 0.71 0.937555
Target:  5'- --cGGCGGAGAUGGCGGagGUGg-CGg -3'
miRNA:   3'- gaaCCGUUUCUACCGCCggUACgaGC- -5'
32784 5' -54 NC_007346.1 + 197699 0.7 0.954352
Target:  5'- -gUGGUGGAGAUGGUGGCgGUGg--- -3'
miRNA:   3'- gaACCGUUUCUACCGCCGgUACgagc -5'
32784 5' -54 NC_007346.1 + 200578 0.7 0.954352
Target:  5'- -gUGGCAAuGAUGGCGGUgAUGgUg- -3'
miRNA:   3'- gaACCGUUuCUACCGCCGgUACgAgc -5'
32784 5' -54 NC_007346.1 + 308900 0.7 0.954352
Target:  5'- --aGGCGGAGAUGGCGGUgGaGUaggCGg -3'
miRNA:   3'- gaaCCGUUUCUACCGCCGgUaCGa--GC- -5'
32784 5' -54 NC_007346.1 + 188052 0.7 0.958018
Target:  5'- --aGGUGAGGGUGGCGG-CGUGggCGg -3'
miRNA:   3'- gaaCCGUUUCUACCGCCgGUACgaGC- -5'
32784 5' -54 NC_007346.1 + 307834 0.7 0.958018
Target:  5'- -gUGGUggaGGAGAUGGCGGCgGUGgaUUGg -3'
miRNA:   3'- gaACCG---UUUCUACCGCCGgUACg-AGC- -5'
32784 5' -54 NC_007346.1 + 308640 0.7 0.958018
Target:  5'- -gUGGUggaGGAGAUGGCGGCgGUGgaUUGg -3'
miRNA:   3'- gaACCG---UUUCUACCGCCGgUACg-AGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.