Results 21 - 40 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32784 | 5' | -54 | NC_007346.1 | + | 198464 | 0.67 | 0.990061 |
Target: 5'- -gUGGUGGAGAUGGUGGUgGUGg--- -3' miRNA: 3'- gaACCGUUUCUACCGCCGgUACgagc -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 49994 | 0.67 | 0.99123 |
Target: 5'- -gUGGCGAugguGGUGGUGGCgAUGgCgaggCGg -3' miRNA: 3'- gaACCGUUu---CUACCGCCGgUAC-Ga---GC- -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 398613 | 0.67 | 0.988774 |
Target: 5'- --cGGUAAAGAUcGGCGuuCCAUGUUCc -3' miRNA: 3'- gaaCCGUUUCUA-CCGCc-GGUACGAGc -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 274460 | 0.67 | 0.988774 |
Target: 5'- gCUUGGCAAgcGGugcauucucaAUGGCGGUCAUGa-CGa -3' miRNA: 3'- -GAACCGUU--UC----------UACCGCCGGUACgaGC- -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 189926 | 0.67 | 0.988774 |
Target: 5'- --cGGCGGuGAUGGUGGCgGUGacggCGa -3' miRNA: 3'- gaaCCGUUuCUACCGCCGgUACga--GC- -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 343908 | 0.67 | 0.990061 |
Target: 5'- uCUUGGU--GGAaucaacuuUGGUcauGCCAUGCUCGg -3' miRNA: 3'- -GAACCGuuUCU--------ACCGc--CGGUACGAGC- -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 308787 | 0.67 | 0.990061 |
Target: 5'- -aUGGCGgugGAGAUGGCGGUgGggGCa-- -3' miRNA: 3'- gaACCGU---UUCUACCGCCGgUa-CGagc -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 178723 | 0.67 | 0.99324 |
Target: 5'- -gUGGCGAuGGUGGUGGUgAUGgUgGa -3' miRNA: 3'- gaACCGUUuCUACCGCCGgUACgAgC- -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 178669 | 0.67 | 0.99324 |
Target: 5'- -gUGGCGGAGAUGGgGGUaacgGCg-- -3' miRNA: 3'- gaACCGUUUCUACCgCCGgua-CGagc -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 311376 | 0.67 | 0.99324 |
Target: 5'- --cGGCAGAGAaGGCGGCg--GCgaCGg -3' miRNA: 3'- gaaCCGUUUCUaCCGCCGguaCGa-GC- -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 310217 | 0.67 | 0.992871 |
Target: 5'- -aUGGCGGuggaggagauugcGAUGGUGGC-AUGCUUGa -3' miRNA: 3'- gaACCGUUu------------CUACCGCCGgUACGAGC- -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 181912 | 0.67 | 0.992287 |
Target: 5'- -aUGGCGGGGGUGGCGGggGUGgUg- -3' miRNA: 3'- gaACCGUUUCUACCGCCggUACgAgc -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 181951 | 0.67 | 0.992287 |
Target: 5'- -aUGGCGGGGGUGGCGGggGUGgUg- -3' miRNA: 3'- gaACCGUUUCUACCGCCggUACgAgc -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 266553 | 0.67 | 0.992287 |
Target: 5'- --aGGCAGu-GUGGCGGCUcgGCa-- -3' miRNA: 3'- gaaCCGUUucUACCGCCGGuaCGagc -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 266607 | 0.67 | 0.992287 |
Target: 5'- --aGGCAGu-GUGGCGGCUcgGCa-- -3' miRNA: 3'- gaaCCGUUucUACCGCCGGuaCGagc -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 128183 | 0.67 | 0.99123 |
Target: 5'- -gUGGCGGuGAUGGUGGUgGUGgaCUUGg -3' miRNA: 3'- gaACCGUUuCUACCGCCGgUAC--GAGC- -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 308095 | 0.67 | 0.99123 |
Target: 5'- -gUGGUggaGGAGAUGGCGGUgGUGgaUUGg -3' miRNA: 3'- gaACCG---UUUCUACCGCCGgUACg-AGC- -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 311757 | 0.67 | 0.99123 |
Target: 5'- -gUGGUGGAGAUGGCGGUg--GCg-- -3' miRNA: 3'- gaACCGUUUCUACCGCCGguaCGagc -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 178696 | 0.67 | 0.99324 |
Target: 5'- -gUGGCGAuGGUGGUGGUgAUGgUgGa -3' miRNA: 3'- gaACCGUUuCUACCGCCGgUACgAgC- -5' |
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32784 | 5' | -54 | NC_007346.1 | + | 189434 | 0.68 | 0.982294 |
Target: 5'- --cGGCGAcGGUGGUGGCgGUGacggCGg -3' miRNA: 3'- gaaCCGUUuCUACCGCCGgUACga--GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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