miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32789 5' -52.4 NC_007346.1 + 274074 0.66 0.999425
Target:  5'- uGACGCGaugcGUCCGUauuuCGAcGggUGCGCGa -3'
miRNA:   3'- -UUGCGU----UAGGCGgu--GCU-CuaAUGCGC- -5'
32789 5' -52.4 NC_007346.1 + 54163 0.66 0.999425
Target:  5'- uACGCAucguuUuuGCCAUGAGuucaGCGCa -3'
miRNA:   3'- uUGCGUu----AggCGGUGCUCuaa-UGCGc -5'
32789 5' -52.4 NC_007346.1 + 260225 0.66 0.99863
Target:  5'- gAGCGC-GUCCgugGCCACGAGAagaaauaccgggucgUcgUGCGCGc -3'
miRNA:   3'- -UUGCGuUAGG---CGGUGCUCU---------------A--AUGCGC- -5'
32789 5' -52.4 NC_007346.1 + 265723 0.67 0.998251
Target:  5'- gGACGCAG-CCGCgCGCG-GAUUAUuaGCa -3'
miRNA:   3'- -UUGCGUUaGGCG-GUGCuCUAAUG--CGc -5'
32789 5' -52.4 NC_007346.1 + 257390 0.67 0.996659
Target:  5'- cGCGUAAUCuCGUgGCG-GAUUGCGUu -3'
miRNA:   3'- uUGCGUUAG-GCGgUGCuCUAAUGCGc -5'
32789 5' -52.4 NC_007346.1 + 86454 0.68 0.996113
Target:  5'- cACGCucggCCGCCuCGAGGUggACGUa -3'
miRNA:   3'- uUGCGuua-GGCGGuGCUCUAa-UGCGc -5'
32789 5' -52.4 NC_007346.1 + 255090 0.68 0.994802
Target:  5'- cGCGCAAUCuCGCgCGCaGAGAagGCgGCGa -3'
miRNA:   3'- uUGCGUUAG-GCG-GUG-CUCUaaUG-CGC- -5'
32789 5' -52.4 NC_007346.1 + 274600 0.69 0.989925
Target:  5'- gGACGCAAgaaCGCgagCGCGAGAUUAC-CGa -3'
miRNA:   3'- -UUGCGUUag-GCG---GUGCUCUAAUGcGC- -5'
32789 5' -52.4 NC_007346.1 + 44138 0.69 0.988617
Target:  5'- cGGCGCGcgCUGCUGCGAuGcaUGCGCGa -3'
miRNA:   3'- -UUGCGUuaGGCGGUGCU-CuaAUGCGC- -5'
32789 5' -52.4 NC_007346.1 + 130771 0.7 0.985611
Target:  5'- cAUGCGAa-CGuCCACGAGGUUAUGCa -3'
miRNA:   3'- uUGCGUUagGC-GGUGCUCUAAUGCGc -5'
32789 5' -52.4 NC_007346.1 + 254642 0.77 0.764574
Target:  5'- aGACGCcuuaaucgCCGCCuucucugcgcGCGAGAUUGCGCGa -3'
miRNA:   3'- -UUGCGuua-----GGCGG----------UGCUCUAAUGCGC- -5'
32789 5' -52.4 NC_007346.1 + 253540 0.79 0.678709
Target:  5'- aAugGCcaccuucUCCGCgCGCGAGAUUGCGCGa -3'
miRNA:   3'- -UugCGuu-----AGGCG-GUGCUCUAAUGCGC- -5'
32789 5' -52.4 NC_007346.1 + 257822 1.07 0.022725
Target:  5'- gAACGCAAUCCGCCACGAGAUUACGCGu -3'
miRNA:   3'- -UUGCGUUAGGCGGUGCUCUAAUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.