miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32793 3' -49 NC_007346.1 + 187284 0.66 0.99998
Target:  5'- gGUgGcgGaGCCACUGCGggaggUGUUGGUGc -3'
miRNA:   3'- -CGgUuaC-CGGUGGCGCa----AUAAUCAUu -5'
32793 3' -49 NC_007346.1 + 396570 0.66 0.99998
Target:  5'- aCCAAUGucuauacCCACUGCGUauaUGUUGGUGu -3'
miRNA:   3'- cGGUUACc------GGUGGCGCA---AUAAUCAUu -5'
32793 3' -49 NC_007346.1 + 128539 0.67 0.999937
Target:  5'- uGCaGAUGGCgGCgGUGgaGUUGGUGAu -3'
miRNA:   3'- -CGgUUACCGgUGgCGCaaUAAUCAUU- -5'
32793 3' -49 NC_007346.1 + 122549 0.68 0.999825
Target:  5'- gGCC-AUGGCCAauGCGgcGUUGGg-- -3'
miRNA:   3'- -CGGuUACCGGUggCGCaaUAAUCauu -5'
32793 3' -49 NC_007346.1 + 200637 0.68 0.999777
Target:  5'- cGgUGAUGGCgAUgGUGUUGUUGGUGGa -3'
miRNA:   3'- -CgGUUACCGgUGgCGCAAUAAUCAUU- -5'
32793 3' -49 NC_007346.1 + 50207 0.68 0.99972
Target:  5'- uGCCA---GCCACCGCGUUAa------ -3'
miRNA:   3'- -CGGUuacCGGUGGCGCAAUaaucauu -5'
32793 3' -49 NC_007346.1 + 182606 0.68 0.99972
Target:  5'- -aCAAUGGaCACUGCGUUccaguaGUUAGUAc -3'
miRNA:   3'- cgGUUACCgGUGGCGCAA------UAAUCAUu -5'
32793 3' -49 NC_007346.1 + 239393 0.68 0.99972
Target:  5'- uCCAuguUGGCCAUUGUGUUug-GGUGAu -3'
miRNA:   3'- cGGUu--ACCGGUGGCGCAAuaaUCAUU- -5'
32793 3' -49 NC_007346.1 + 239285 0.68 0.99972
Target:  5'- uCCAuguUGGCCAUUGUGUUug-GGUGAu -3'
miRNA:   3'- cGGUu--ACCGGUGGCGCAAuaaUCAUU- -5'
32793 3' -49 NC_007346.1 + 167397 0.69 0.99946
Target:  5'- uUCAAUgaGGCCACCGCGaUUGUaugcaaauUGGUGGa -3'
miRNA:   3'- cGGUUA--CCGGUGGCGC-AAUA--------AUCAUU- -5'
32793 3' -49 NC_007346.1 + 367210 0.7 0.998808
Target:  5'- cGCCAGUGGagugUACCGC--UGUUGGUAc -3'
miRNA:   3'- -CGGUUACCg---GUGGCGcaAUAAUCAUu -5'
32793 3' -49 NC_007346.1 + 21837 0.71 0.996643
Target:  5'- gGCCAAUgcaGGCCACaauggCGCGUgcgUGGUAGu -3'
miRNA:   3'- -CGGUUA---CCGGUG-----GCGCAauaAUCAUU- -5'
32793 3' -49 NC_007346.1 + 277092 0.75 0.958224
Target:  5'- aGCCAAUGGCgACUGgGUUAUUAu--- -3'
miRNA:   3'- -CGGUUACCGgUGGCgCAAUAAUcauu -5'
32793 3' -49 NC_007346.1 + 67413 0.79 0.837977
Target:  5'- uUCAAUGGCCACCGUGUUGUUc---- -3'
miRNA:   3'- cGGUUACCGGUGGCGCAAUAAucauu -5'
32793 3' -49 NC_007346.1 + 260769 1.1 0.027609
Target:  5'- cGCCAAUGGCCACCGCGUUAUUAGUAAa -3'
miRNA:   3'- -CGGUUACCGGUGGCGCAAUAAUCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.