miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32794 3' -51.4 NC_007346.1 + 307178 0.66 0.999822
Target:  5'- gCGGUGgAcuuGGCggCGGCGACGGGCUGGg- -3'
miRNA:   3'- -GUCAUgU---UUG--GUUGCUGCCUGGCCau -5'
32794 3' -51.4 NC_007346.1 + 371299 0.66 0.999822
Target:  5'- --aUACAGcAUCGACGACG-ACCGGUu -3'
miRNA:   3'- gucAUGUU-UGGUUGCUGCcUGGCCAu -5'
32794 3' -51.4 NC_007346.1 + 361080 0.66 0.999796
Target:  5'- aUAGUGgcGACCAGuCGACGGuaucgcauagauauCCGGUAu -3'
miRNA:   3'- -GUCAUguUUGGUU-GCUGCCu-------------GGCCAU- -5'
32794 3' -51.4 NC_007346.1 + 111980 0.66 0.99972
Target:  5'- uGGUGCGugaguagUCAugGGCGGcACUGGUAg -3'
miRNA:   3'- gUCAUGUuu-----GGUugCUGCC-UGGCCAU- -5'
32794 3' -51.4 NC_007346.1 + 237866 0.66 0.999652
Target:  5'- aAGUAacCAGauGCgGGCGAUGcGGCCGGUAc -3'
miRNA:   3'- gUCAU--GUU--UGgUUGCUGC-CUGGCCAU- -5'
32794 3' -51.4 NC_007346.1 + 297887 0.67 0.999471
Target:  5'- gGGUAC-AACCAACaaguACGGACgGGa- -3'
miRNA:   3'- gUCAUGuUUGGUUGc---UGCCUGgCCau -5'
32794 3' -51.4 NC_007346.1 + 255687 0.67 0.999214
Target:  5'- gAGgagGCAAuugCGGCGGCGG-CCGGUGu -3'
miRNA:   3'- gUCa--UGUUug-GUUGCUGCCuGGCCAU- -5'
32794 3' -51.4 NC_007346.1 + 160664 0.67 0.999184
Target:  5'- -uGUGCAucgauauccgauACCGGCGGCGcuGCCGGUAc -3'
miRNA:   3'- guCAUGUu-----------UGGUUGCUGCc-UGGCCAU- -5'
32794 3' -51.4 NC_007346.1 + 97622 0.67 0.99905
Target:  5'- aAGUACuGGCCGuACGAUGGaAUCGGa- -3'
miRNA:   3'- gUCAUGuUUGGU-UGCUGCC-UGGCCau -5'
32794 3' -51.4 NC_007346.1 + 304901 0.68 0.997714
Target:  5'- gGGUACGGACUucCGugGGGgguggccacucCCGGUGg -3'
miRNA:   3'- gUCAUGUUUGGuuGCugCCU-----------GGCCAU- -5'
32794 3' -51.4 NC_007346.1 + 200796 0.69 0.994328
Target:  5'- aCGGUGgAGGCggCggUGACGGAaCCGGUGa -3'
miRNA:   3'- -GUCAUgUUUG--GuuGCUGCCU-GGCCAU- -5'
32794 3' -51.4 NC_007346.1 + 221568 0.7 0.989107
Target:  5'- gGGUGC--GCCAACGGCGGcACCGc-- -3'
miRNA:   3'- gUCAUGuuUGGUUGCUGCC-UGGCcau -5'
32794 3' -51.4 NC_007346.1 + 239309 0.71 0.986189
Target:  5'- uGGUAU--GCCGACGGCGGucgcguGCCGGa- -3'
miRNA:   3'- gUCAUGuuUGGUUGCUGCC------UGGCCau -5'
32794 3' -51.4 NC_007346.1 + 261580 1.07 0.026515
Target:  5'- aCAGUACAAACCAACGACGGACCGGUAu -3'
miRNA:   3'- -GUCAUGUUUGGUUGCUGCCUGGCCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.