miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32796 5' -43.3 NC_007346.1 + 239140 0.66 1
Target:  5'- aUGCCGAAUCUGUcgauugACA-CUACca-UCa -3'
miRNA:   3'- aACGGUUUAGACA------UGUaGAUGauaAG- -5'
32796 5' -43.3 NC_007346.1 + 304453 0.67 1
Target:  5'- aUUGCCAuGUCcacuuaaaUGUACAgcucCUGCUGUUa -3'
miRNA:   3'- -AACGGUuUAG--------ACAUGUa---GAUGAUAAg -5'
32796 5' -43.3 NC_007346.1 + 100883 0.69 1
Target:  5'- uUUGCCGAGagagcuUCUGUGCGuUCUGCa---- -3'
miRNA:   3'- -AACGGUUU------AGACAUGU-AGAUGauaag -5'
32796 5' -43.3 NC_007346.1 + 158911 0.7 1
Target:  5'- aUGCCAAAUauaUGUACuaaUugUAUUCa -3'
miRNA:   3'- aACGGUUUAg--ACAUGuagAugAUAAG- -5'
32796 5' -43.3 NC_007346.1 + 103845 0.66 1
Target:  5'- aUGCCAuAUa-GUACAUCUACa---- -3'
miRNA:   3'- aACGGUuUAgaCAUGUAGAUGauaag -5'
32796 5' -43.3 NC_007346.1 + 386491 0.68 1
Target:  5'- cUGCCA--UCUGUGCGacuUUUGCUucAUUCu -3'
miRNA:   3'- aACGGUuuAGACAUGU---AGAUGA--UAAG- -5'
32796 5' -43.3 NC_007346.1 + 295404 0.66 1
Target:  5'- aUGCCAAAUUUGgcacCAUCUGuCcAUUCc -3'
miRNA:   3'- aACGGUUUAGACau--GUAGAU-GaUAAG- -5'
32796 5' -43.3 NC_007346.1 + 289002 0.66 1
Target:  5'- cUGCCAGAUCaccaccaccacccccUGCGUUUGCUAUUa -3'
miRNA:   3'- aACGGUUUAGac-------------AUGUAGAUGAUAAg -5'
32796 5' -43.3 NC_007346.1 + 373736 0.66 1
Target:  5'- -gGCCAAGcuUCgcaGUACAagUACUAUUUa -3'
miRNA:   3'- aaCGGUUU--AGa--CAUGUagAUGAUAAG- -5'
32796 5' -43.3 NC_007346.1 + 5917 0.7 0.999999
Target:  5'- aUUGCCGcacGUUUGUugGUUgaUGCUGUUCg -3'
miRNA:   3'- -AACGGUu--UAGACAugUAG--AUGAUAAG- -5'
32796 5' -43.3 NC_007346.1 + 160675 0.71 0.999998
Target:  5'- gUUGCCGuAUCUGUGCAUCga-UAUcCg -3'
miRNA:   3'- -AACGGUuUAGACAUGUAGaugAUAaG- -5'
32796 5' -43.3 NC_007346.1 + 105810 0.74 0.999902
Target:  5'- cUUGCUAcaAAUCUGUACAUCcACUuuUUCg -3'
miRNA:   3'- -AACGGU--UUAGACAUGUAGaUGAu-AAG- -5'
32796 5' -43.3 NC_007346.1 + 80952 0.75 0.999457
Target:  5'- aUGCCGAGU-UGUAUaaauggaaGUCUGCUGUUCa -3'
miRNA:   3'- aACGGUUUAgACAUG--------UAGAUGAUAAG- -5'
32796 5' -43.3 NC_007346.1 + 266306 1.09 0.101007
Target:  5'- uUUGCCAAAUCUGUACAUCUACUAUUCu -3'
miRNA:   3'- -AACGGUUUAGACAUGUAGAUGAUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.